Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DQW89_RS15495 Genome accession   NZ_CP030281
Coordinates   2911327..2911956 (-) Length   209 a.a.
NCBI ID   WP_118393965.1    Uniprot ID   -
Organism   Escherichia coli strain E308     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2906327..2916956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQW89_RS15480 (DQW89_15480) helD 2906569..2908623 (-) 2055 WP_001295354.1 DNA helicase IV -
  DQW89_RS15485 (DQW89_15485) yccF 2908746..2909192 (+) 447 WP_001261235.1 YccF domain-containing protein -
  DQW89_RS15490 (DQW89_15490) yccS 2909202..2911364 (+) 2163 WP_162883668.1 YccS family putative transporter -
  DQW89_RS15495 (DQW89_15495) sxy/tfoX 2911327..2911956 (-) 630 WP_118393965.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  DQW89_RS15500 (DQW89_15500) sulA 2912175..2912684 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  DQW89_RS15510 (DQW89_15510) ompA 2913041..2914081 (+) 1041 WP_000750416.1 porin OmpA -
  DQW89_RS15515 (DQW89_15515) matP 2914157..2914609 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  DQW89_RS15520 (DQW89_15520) ycbZ 2914795..2916555 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24113.00 Da        Isoelectric Point: 9.2180

>NTDB_id=300554 DQW89_RS15495 WP_118393965.1 2911327..2911956(-) (sxy/tfoX) [Escherichia coli strain E308]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQELPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=300554 DQW89_RS15495 WP_118393965.1 2911327..2911956(-) (sxy/tfoX) [Escherichia coli strain E308]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTACCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment