Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ETL58_RS02495 Genome accession   NZ_CP035413
Coordinates   478028..478462 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SRCM103629     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 473028..483462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL58_RS02465 (ETL58_02465) ydaD 473676..474536 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  ETL58_RS02470 (ETL58_02470) lyxE 474552..475055 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  ETL58_RS02475 (ETL58_02475) ydaF 475141..475692 (+) 552 WP_003246691.1 GNAT family protein -
  ETL58_RS02480 (ETL58_02480) ydaG 475770..476192 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  ETL58_RS02485 (ETL58_02485) amj 476698..477507 (+) 810 WP_061891247.1 lipid II flippase Amj -
  ETL58_RS02490 (ETL58_02490) ydzA 477552..477842 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  ETL58_RS02495 (ETL58_02495) lrpC 478028..478462 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  ETL58_RS02500 (ETL58_02500) topB 478527..480710 (+) 2184 WP_076458431.1 DNA topoisomerase III -
  ETL58_RS02505 (ETL58_02505) ephJ 480913..482001 (+) 1089 WP_101172137.1 lipoprotein YdaJ -
  ETL58_RS02510 (ETL58_02510) epsK 481982..482833 (+) 852 WP_003234384.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=300478 ETL58_RS02495 WP_003246585.1 478028..478462(+) (lrpC) [Bacillus subtilis strain SRCM103629]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=300478 ETL58_RS02495 WP_003246585.1 478028..478462(+) (lrpC) [Bacillus subtilis strain SRCM103629]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCTCCACCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1