Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   DQ228_RS09145 Genome accession   NZ_CP030250
Coordinates   1777141..1778097 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus strain CS20     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1772141..1783097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQ228_RS09110 proC 1772700..1773470 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  DQ228_RS09115 - 1773500..1774162 (-) 663 WP_011681679.1 CPBP family intramembrane glutamic endopeptidase -
  DQ228_RS09120 - 1774259..1774702 (-) 444 WP_011681680.1 hypothetical protein -
  DQ228_RS09125 - 1774776..1775114 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  DQ228_RS09130 - 1775158..1775433 (-) 276 WP_011681681.1 hypothetical protein -
  DQ228_RS09135 - 1775445..1775643 (-) 199 Protein_1785 helix-turn-helix transcriptional regulator -
  DQ228_RS09140 - 1775892..1777085 (-) 1194 WP_014608740.1 acetate kinase -
  DQ228_RS09145 comYH 1777141..1778097 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  DQ228_RS09150 comGG 1778142..1778459 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG -
  DQ228_RS09155 comYF 1778437..1778874 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQ228_RS09160 comGE 1778858..1779151 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  DQ228_RS09165 comYD 1779123..1779551 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQ228_RS09170 comYC 1779511..1779837 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  DQ228_RS09175 comYB 1779834..1780934 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQ228_RS09180 comGA/cglA/cilD 1780816..1781757 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  DQ228_RS09185 - 1781838..1782200 (-) 363 WP_014622006.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=300449 DQ228_RS09145 WP_011226622.1 1777141..1778097(-) (comYH) [Streptococcus thermophilus strain CS20]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=300449 DQ228_RS09145 WP_011226622.1 1777141..1778097(-) (comYH) [Streptococcus thermophilus strain CS20]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAATG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682

Multiple sequence alignment