Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   DQ228_RS08145 Genome accession   NZ_CP030250
Coordinates   1585214..1586290 (-) Length   358 a.a.
NCBI ID   WP_011681549.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS20     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1580214..1591290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQ228_RS08125 - 1581326..1583392 (-) 2067 WP_179970583.1 cation:proton antiporter -
  DQ228_RS08130 - 1583401..1583643 (-) 243 WP_011226461.1 hypothetical protein -
  DQ228_RS08135 - 1583640..1584188 (-) 549 WP_011226462.1 tRNA (mnm(5)s(2)U34)-methyltransferase -
  DQ228_RS08140 - 1584185..1585129 (-) 945 WP_011226463.1 TIGR01212 family radical SAM protein -
  DQ228_RS08145 sepM 1585214..1586290 (-) 1077 WP_011681549.1 SepM family pheromone-processing serine protease Regulator
  DQ228_RS08150 coaD 1586268..1586765 (-) 498 WP_011681550.1 pantetheine-phosphate adenylyltransferase -
  DQ228_RS08155 rsmD 1586799..1587398 (-) 600 Protein_1595 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  DQ228_RS08160 trxB 1587489..1588442 (-) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  DQ228_RS08165 - 1588475..1588699 (-) 225 WP_082309114.1 DUF4059 family protein -
  DQ228_RS08170 - 1588914..1589657 (-) 744 WP_011681551.1 amino acid ABC transporter ATP-binding protein -
  DQ228_RS08175 - 1589657..1590403 (-) 747 WP_095559509.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 39172.02 Da        Isoelectric Point: 9.3888

>NTDB_id=300444 DQ228_RS08145 WP_011681549.1 1585214..1586290(-) (sepM) [Streptococcus thermophilus strain CS20]
MANKTKSKALLEKMWRIKWWLLSIFTVLFLLFALFFPLNNYYVELPGGAFDTKEVLTVNKKADDSKGSYNFVAVAQTKAT
LALMLYAQFNDFAKLQTAEEATGNYSDEDFMRINQFYMETSQNQAVYQGLTLAGKEVSLEYMGVYVLQVADDSSFKGVLN
IADTVTAVNGNTFDNSTDMIKYVQGLKLGSKVKVTYMRDGKEKTATGKIIKIANGKNGIGIGLTDHTEIKSPENVKFKLD
GVGGPSAGLMFTLAIYDQVSGQDLKAGRKIAGTGTIEKDGAVGDIGGAYLKVKSAADSGADIFFVPNNLVTKEMKKADPD
AKTNYQEAKEAAEKLGTKMKIVPVKTAQEAIDYLKKTK

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=300444 DQ228_RS08145 WP_011681549.1 1585214..1586290(-) (sepM) [Streptococcus thermophilus strain CS20]
GTGGCAAACAAGACAAAATCTAAAGCGCTATTAGAGAAAATGTGGCGTATTAAGTGGTGGTTATTAAGTATTTTTACGGT
ACTTTTCCTCCTTTTTGCCCTCTTTTTCCCGCTCAATAATTACTATGTGGAGCTTCCGGGTGGTGCTTTTGATACCAAGG
AAGTCTTGACAGTGAATAAGAAAGCTGATGATTCTAAGGGCTCCTATAATTTTGTGGCGGTGGCTCAAACCAAGGCGACT
TTGGCCTTGATGCTCTATGCTCAGTTTAATGATTTTGCAAAGCTTCAAACGGCTGAAGAGGCAACTGGAAATTACTCTGA
TGAAGATTTCATGCGCATCAACCAATTTTACATGGAGACTTCTCAAAACCAAGCGGTTTATCAGGGCTTGACTCTGGCTG
GTAAGGAGGTTAGTTTGGAGTATATGGGTGTCTATGTGCTTCAGGTTGCTGATGATTCTAGCTTCAAGGGTGTCCTCAAT
ATTGCTGATACGGTGACGGCTGTTAATGGTAATACCTTTGATAATTCTACTGACATGATTAAATACGTTCAAGGACTTAA
GCTGGGTTCAAAGGTCAAGGTCACTTATATGAGAGATGGCAAAGAAAAGACTGCTACTGGTAAGATTATTAAGATTGCCA
ATGGCAAAAATGGTATTGGTATCGGCCTAACGGACCATACTGAGATCAAGAGTCCTGAGAATGTTAAGTTTAAACTGGAT
GGTGTCGGTGGGCCAAGTGCTGGTCTTATGTTTACCTTGGCTATTTACGATCAGGTGTCTGGTCAAGACCTCAAGGCTGG
CCGCAAGATTGCTGGTACAGGAACTATTGAAAAAGATGGGGCTGTCGGTGATATCGGTGGGGCCTATCTCAAGGTGAAAT
CTGCGGCTGATAGTGGCGCAGACATTTTCTTCGTGCCAAATAATCTAGTAACTAAGGAAATGAAAAAGGCTGATCCGGAT
GCCAAGACTAATTATCAAGAGGCCAAGGAAGCTGCCGAGAAACTGGGGACCAAGATGAAAATCGTCCCTGTTAAAACAGC
TCAAGAAGCCATTGATTATTTGAAAAAGACTAAATGA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(137-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

62.757

95.251

0.598

Multiple sequence alignment