Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ETK71_RS06785 Genome accession   NZ_CP035411
Coordinates   1294942..1296078 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103622     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1289942..1301078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK71_RS06765 (ETK71_06765) uxaA 1290392..1291885 (+) 1494 WP_041850944.1 altronate dehydratase family protein -
  ETK71_RS06770 (ETK71_06770) yjnA 1291924..1292688 (-) 765 WP_038828729.1 sulfite exporter TauE/SafE family protein -
  ETK71_RS06775 (ETK71_06775) bstD 1292913..1293377 (-) 465 WP_041850943.1 DinB family protein -
  ETK71_RS06780 (ETK71_06780) yjoB 1293526..1294797 (+) 1272 WP_129138145.1 ATPase YjoB -
  ETK71_RS06785 (ETK71_06785) rapC 1294942..1296078 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  ETK71_RS06790 (ETK71_06790) phrA 1296068..1296202 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  ETK71_RS06795 (ETK71_06795) yjpA 1296233..1296490 (-) 258 WP_003232731.1 YciI family protein -
  ETK71_RS06800 (ETK71_06800) xlyB 1296611..1297564 (+) 954 WP_041850941.1 N-acetylmuramoyl-L-alanine amidase -
  ETK71_RS06805 (ETK71_06805) yjqA 1297604..1297981 (-) 378 WP_041850940.1 PH domain-containing protein -
  ETK71_RS06810 (ETK71_06810) pghB 1298086..1298688 (+) 603 WP_038828723.1 poly-gamma-glutamate hydrolase family protein -
  ETK71_RS06815 (ETK71_06815) xpdC 1298765..1299601 (+) 837 WP_003245071.1 manganese catalase family protein -
  ETK71_RS06820 (ETK71_06820) xkdA 1299645..1300241 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  ETK71_RS06825 (ETK71_06825) xre 1300404..1300745 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=300355 ETK71_RS06785 WP_015252291.1 1294942..1296078(+) (rapC) [Bacillus subtilis strain SRCM103622]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=300355 ETK71_RS06785 WP_015252291.1 1294942..1296078(+) (rapC) [Bacillus subtilis strain SRCM103622]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTGTATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418