Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DQ225_RS15235 Genome accession   NZ_CP030240
Coordinates   3164978..3165607 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ER1709     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3159978..3170607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQ225_RS15215 (DQ225_16210) ycbZ 3160380..3162140 (-) 1761 WP_000156518.1 Lon protease family protein -
  DQ225_RS15220 (DQ225_16215) matP 3162326..3162778 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  DQ225_RS15225 (DQ225_16220) ompA 3162854..3163894 (-) 1041 WP_000750416.1 porin OmpA -
  DQ225_RS15230 (DQ225_16230) sulA 3164250..3164759 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  DQ225_RS15235 (DQ225_16235) sxy/tfoX 3164978..3165607 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  DQ225_RS15240 (DQ225_16240) yccS 3165570..3167732 (-) 2163 WP_000875061.1 YccS family putative transporter -
  DQ225_RS15245 (DQ225_16245) yccF 3167742..3168188 (-) 447 WP_001261235.1 YccF domain-containing protein -
  DQ225_RS15250 (DQ225_16250) helD 3168311..3170365 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=300313 DQ225_RS15235 WP_000839153.1 3164978..3165607(+) (sxy/tfoX) [Escherichia coli strain ER1709]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=300313 DQ225_RS15235 WP_000839153.1 3164978..3165607(+) (sxy/tfoX) [Escherichia coli strain ER1709]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment