Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DPM13_RS17930 Genome accession   NZ_CP030239
Coordinates   3283338..3284465 (+) Length   375 a.a.
NCBI ID   WP_397245047.1    Uniprot ID   -
Organism   Paracoccus mutanolyticus strain RSP-02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3278338..3289465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPM13_RS17900 (DPM13_17910) - 3278937..3279599 (-) 663 WP_112888538.1 alpha/beta hydrolase -
  DPM13_RS17905 (DPM13_17915) - 3279596..3280213 (-) 618 WP_112888539.1 DNA-3-methyladenine glycosylase -
  DPM13_RS17910 (DPM13_17920) - 3280210..3280851 (-) 642 WP_112888540.1 GntR family transcriptional regulator -
  DPM13_RS17915 (DPM13_17925) - 3280915..3281619 (+) 705 WP_112888541.1 pyrimidine 5'-nucleotidase -
  DPM13_RS17920 (DPM13_17930) - 3281631..3281816 (+) 186 WP_036762410.1 hypothetical protein -
  DPM13_RS17925 (DPM13_17935) - 3281835..3283001 (+) 1167 WP_112888542.1 UbiH/UbiF family hydroxylase -
  DPM13_RS27500 - 3283099..3283164 (+) 66 Protein_3807 hypothetical protein -
  DPM13_RS17930 (DPM13_17940) radA 3283338..3284465 (+) 1128 WP_397245047.1 DNA repair protein RadA Machinery gene
  DPM13_RS17935 (DPM13_17945) - 3284508..3285110 (+) 603 WP_112888543.1 CvpA family protein -
  DPM13_RS17940 (DPM13_17950) purF 3285258..3286754 (+) 1497 WP_112888812.1 amidophosphoribosyltransferase -
  DPM13_RS17945 (DPM13_17955) purN 3286834..3287430 (-) 597 WP_112888544.1 phosphoribosylglycinamide formyltransferase -
  DPM13_RS17950 (DPM13_17960) purM 3287427..3288473 (-) 1047 WP_112888545.1 phosphoribosylformylglycinamidine cyclo-ligase -
  DPM13_RS27505 (DPM13_17965) bhcR 3288534..3289380 (-) 847 Protein_3813 HTH-type transcriptional regulator BhcR -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 38930.47 Da        Isoelectric Point: 5.4742

>NTDB_id=300293 DPM13_RS17930 WP_397245047.1 3283338..3284465(+) (radA) [Paracoccus mutanolyticus strain RSP-02]
MPGGGLVPGSAILVGGDPGIGKSTLLLQAASAFARSGQSAIYISGEEASAQVRMRAQRLGLGDAPVRLGAETALRDILTT
LDAERPDVAVIDSIQTLWSDQIEAAPGSVSQVRATAHELTTFAKRRGTSVILVGHVTKEGQIAGPRVVEHMVDTVLYFEG
ERGHQFRILRAHKNRFGPADEIGVFEMTGGGLAEVANPSALFLSERGEPSPGSAVFAGIEGTRPVLTEVQALVAPSTLAS
PRRTVVGLDSGRVSTILAVLEARCAIPFAGLDVFLNVAGGMRVNEPAADLAIAAALLSAREDTALPADCAIFGEISLSGA
LRPVAQAENRLKEAQKLGFSRAILPAATKVEGLAGMRIDRVPDLTSFVGETFGAG

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=300293 DPM13_RS17930 WP_397245047.1 3283338..3284465(+) (radA) [Paracoccus mutanolyticus strain RSP-02]
TTGCCGGGCGGCGGCCTGGTGCCCGGCTCGGCCATCCTGGTCGGCGGCGATCCCGGCATCGGCAAGTCGACGCTGCTCTT
GCAGGCGGCCAGCGCCTTTGCCCGCTCGGGCCAGAGCGCCATCTACATCTCGGGCGAGGAGGCCAGCGCCCAGGTCCGCA
TGCGGGCGCAACGCCTGGGCCTCGGCGATGCGCCGGTGCGGCTGGGGGCGGAAACGGCGCTGCGCGACATCCTGACGACG
CTCGATGCCGAACGCCCCGATGTGGCGGTGATCGACTCGATCCAGACCCTCTGGTCGGATCAGATCGAGGCCGCGCCCGG
TTCCGTCAGCCAGGTCCGCGCCACCGCGCATGAACTGACCACCTTTGCCAAGCGGCGCGGCACCTCGGTCATCCTGGTCG
GCCATGTCACCAAGGAAGGCCAGATTGCCGGCCCGCGCGTGGTCGAACACATGGTCGATACCGTGCTCTATTTCGAAGGC
GAGCGCGGCCACCAGTTCCGCATCCTGCGCGCCCACAAGAACCGCTTCGGCCCCGCCGACGAGATCGGCGTCTTCGAGAT
GACCGGCGGTGGGCTGGCCGAGGTCGCGAACCCTTCGGCCCTGTTCCTGTCCGAACGCGGCGAACCCTCGCCCGGCTCGG
CGGTCTTCGCCGGGATCGAGGGCACGCGCCCGGTGCTGACCGAGGTGCAGGCCCTGGTCGCCCCCTCGACGCTGGCCAGC
CCCCGCCGGACGGTGGTTGGGCTTGATTCGGGCCGCGTCTCGACGATCCTTGCCGTGCTCGAGGCGCGCTGCGCCATCCC
CTTTGCCGGGCTCGACGTTTTCCTGAACGTCGCCGGGGGCATGCGGGTCAACGAACCCGCCGCCGACCTGGCCATCGCCG
CCGCCCTTCTCAGCGCGCGCGAGGATACGGCCCTGCCGGCCGACTGCGCCATTTTCGGCGAAATCAGCCTGTCGGGCGCG
CTGCGTCCGGTCGCGCAGGCGGAAAACAGGTTGAAAGAGGCGCAGAAACTTGGTTTTTCACGGGCAATCCTGCCTGCGGC
CACCAAGGTCGAGGGCCTTGCCGGAATGCGGATCGACCGCGTGCCGGATCTGACAAGCTTCGTGGGCGAGACATTCGGTG
CCGGGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(5-140)

Subunit ChlI of Mg-chelatase (ChlI)

(264-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.026

92.533

0.491
  radA Streptococcus mitis NCTC 12261

51.453

91.733

0.472
  radA Streptococcus pneumoniae Rx1

51.163

91.733

0.469
  radA Streptococcus pneumoniae D39

51.163

91.733

0.469
  radA Streptococcus pneumoniae R6

51.163

91.733

0.469
  radA Streptococcus pneumoniae TIGR4

51.163

91.733

0.469
  radA Streptococcus mitis SK321

51.163

91.733

0.469

Multiple sequence alignment