Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ETK61_RS20385 Genome accession   NZ_CP035406
Coordinates   3772250..3773383 (-) Length   377 a.a.
NCBI ID   WP_014481175.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103612     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3767250..3778383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK61_RS20345 (ETK61_20350) ywnA 3767377..3767778 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  ETK61_RS20350 (ETK61_20355) ureC 3767913..3769622 (-) 1710 WP_003243090.1 urease subunit alpha -
  ETK61_RS20355 (ETK61_20360) ureB 3769619..3769993 (-) 375 WP_003227726.1 urease subunit beta -
  ETK61_RS20360 (ETK61_20365) ureA 3769990..3770307 (-) 318 WP_014478236.1 urease subunit gamma -
  ETK61_RS20365 (ETK61_20370) - 3770501..3770623 (-) 123 WP_250615389.1 hypothetical protein -
  ETK61_RS20370 (ETK61_20375) - 3770870..3771052 (-) 183 WP_069837820.1 transporter substrate-binding protein -
  ETK61_RS20375 (ETK61_20380) csbD 3771353..3771541 (-) 189 WP_014481173.1 stress response protein CsbD -
  ETK61_RS20380 (ETK61_20385) - 3771615..3772094 (-) 480 WP_026113664.1 hypothetical protein -
  ETK61_RS20385 (ETK61_20390) rapC 3772250..3773383 (-) 1134 WP_014481175.1 response regulator aspartate phosphatase RapB Regulator
  ETK61_RS20390 (ETK61_20395) moaA 3773575..3774600 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  ETK61_RS20395 (ETK61_20400) fdhD 3774616..3775404 (-) 789 WP_047183330.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  ETK61_RS20400 (ETK61_20405) - 3775637..3775798 (-) 162 WP_003227706.1 hypothetical protein -
  ETK61_RS20405 (ETK61_20410) ywmD 3775893..3776567 (-) 675 WP_129137999.1 VWA domain-containing protein -
  ETK61_RS20410 (ETK61_20415) - 3776620..3776760 (-) 141 WP_014481180.1 hypothetical protein -
  ETK61_RS20415 (ETK61_20420) ywmC 3776891..3777574 (-) 684 WP_041334706.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45041.13 Da        Isoelectric Point: 4.7537

>NTDB_id=300289 ETK61_RS20385 WP_014481175.1 3772250..3773383(-) (rapC) [Bacillus subtilis strain SRCM103612]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALTVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHHEQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=300289 ETK61_RS20385 WP_014481175.1 3772250..3773383(-) (rapC) [Bacillus subtilis strain SRCM103612]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTACTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCACGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.4

99.469

0.422