Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CHD10_RS11030 Genome accession   NZ_CP030231
Coordinates   2240138..2240743 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain SA20043041     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2235138..2245743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHD10_RS11010 (CHD10_11010) - 2235533..2237293 (-) 1761 WP_079899243.1 Lon protease family protein -
  CHD10_RS11015 (CHD10_11015) matP 2237479..2237931 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  CHD10_RS11020 (CHD10_11020) ompA 2238003..2239055 (-) 1053 WP_001670727.1 porin OmpA -
  CHD10_RS11025 (CHD10_11025) sulA 2239412..2239921 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  CHD10_RS11030 (CHD10_11030) sxy/tfoX 2240138..2240743 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  CHD10_RS11035 (CHD10_11035) yccS 2240730..2242883 (-) 2154 WP_000950869.1 YccS family putative transporter -
  CHD10_RS11040 (CHD10_11040) - 2242902..2243348 (-) 447 WP_001261222.1 YccF domain-containing protein -
  CHD10_RS11045 (CHD10_11045) helD 2243472..2245526 (+) 2055 WP_079899244.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=300234 CHD10_RS11030 WP_001202375.1 2240138..2240743(+) (sxy/tfoX) [Salmonella enterica strain SA20043041]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=300234 CHD10_RS11030 WP_001202375.1 2240138..2240743(+) (sxy/tfoX) [Salmonella enterica strain SA20043041]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACTGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCGCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAACACAGGCTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment