Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ETK61_RS07110 Genome accession   NZ_CP035406
Coordinates   1340140..1341276 (+) Length   378 a.a.
NCBI ID   WP_010886491.1    Uniprot ID   Q00828
Organism   Bacillus subtilis strain SRCM103612     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1335140..1346276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK61_RS07090 (ETK61_07090) uxaA 1335590..1337083 (+) 1494 WP_017697315.1 altronate dehydratase family protein -
  ETK61_RS07095 (ETK61_07095) yjnA 1337122..1337886 (-) 765 WP_017697316.1 sulfite exporter TauE/SafE family protein -
  ETK61_RS07100 (ETK61_07100) bstD 1338111..1338575 (-) 465 WP_014479541.1 DinB family protein -
  ETK61_RS07105 (ETK61_07105) yjoB 1338724..1339995 (+) 1272 WP_003245490.1 ATPase YjoB -
  ETK61_RS07110 (ETK61_07110) rapC 1340140..1341276 (+) 1137 WP_010886491.1 response regulator aspartate phosphatase RapA Regulator
  ETK61_RS07115 (ETK61_07115) phrA 1341266..1341400 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  ETK61_RS07120 (ETK61_07120) yjpA 1341431..1341688 (-) 258 WP_041333908.1 YciI family protein -
  ETK61_RS07125 (ETK61_07125) xlyB 1341810..1342763 (+) 954 WP_041333906.1 N-acetylmuramoyl-L-alanine amidase -
  ETK61_RS07130 (ETK61_07130) yjqA 1342802..1343179 (-) 378 WP_014476529.1 PH domain-containing protein -
  ETK61_RS07135 (ETK61_07135) pghB 1343285..1343887 (+) 603 WP_003244789.1 poly-gamma-glutamate hydrolase family protein -
  ETK61_RS07140 (ETK61_07140) xpdC 1343964..1344800 (+) 837 WP_003245071.1 manganese catalase family protein -
  ETK61_RS07145 (ETK61_07145) xkdA 1344844..1345440 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  ETK61_RS07150 (ETK61_07150) xre 1345603..1345944 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44974.16 Da        Isoelectric Point: 4.7611

>NTDB_id=300204 ETK61_RS07110 WP_010886491.1 1340140..1341276(+) (rapC) [Bacillus subtilis strain SRCM103612]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFGKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=300204 ETK61_RS07110 WP_010886491.1 1340140..1341276(+) (rapC) [Bacillus subtilis strain SRCM103612]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGGGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-293)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q00828

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.681

99.471

0.444
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418