Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CHD68_RS15015 Genome accession   NZ_CP030223
Coordinates   2860203..2860808 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain SA20083039     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2855203..2865808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHD68_RS15000 (CHD68_14990) helD 2855420..2857474 (-) 2055 WP_058111841.1 DNA helicase IV -
  CHD68_RS15005 (CHD68_14995) - 2857598..2858044 (+) 447 WP_001261222.1 YccF domain-containing protein -
  CHD68_RS15010 (CHD68_15000) yccS 2858063..2860216 (+) 2154 WP_079982595.1 YccS family putative transporter -
  CHD68_RS15015 (CHD68_15005) sxy/tfoX 2860203..2860808 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  CHD68_RS15020 (CHD68_15010) sulA 2861025..2861534 (+) 510 WP_000288730.1 SOS-induced cell division inhibitor SulA -
  CHD68_RS15025 (CHD68_15015) ompA 2861891..2862943 (+) 1053 WP_001562588.1 porin OmpA -
  CHD68_RS15030 (CHD68_15020) matP 2863015..2863467 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  CHD68_RS15035 (CHD68_15025) - 2863653..2865413 (+) 1761 WP_079982596.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=300195 CHD68_RS15015 WP_001202375.1 2860203..2860808(-) (sxy/tfoX) [Salmonella enterica strain SA20083039]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=300195 CHD68_RS15015 WP_001202375.1 2860203..2860808(-) (sxy/tfoX) [Salmonella enterica strain SA20083039]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCTTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACAGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment