Detailed information NTG0300183

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: ETK61_RS05275
• Genome accession: NZ_CP035406
• Coordinates: 995772..996944 (+)
• Length: 390 a.a.
• NCBI ID: WP_043857176.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain SRCM103612
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 990772..1001944

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ETK61_RS05255 (ETK61_05255)	-	992637..993626 (+)	990	WP_043857174.1	bifunctional lytic transglycosylase/C40 family peptidase	-
ETK61_RS05260 (ETK61_05260)	-	993641..994147 (+)	507	WP_043857175.1	hypothetical protein	-
ETK61_RS05265 (ETK61_05265)	-	994210..994593 (+)	384	WP_033881966.1	cystatin-like fold lipoprotein	-
ETK61_RS05270 (ETK61_05270)	-	994691..995479 (+)	789	WP_129137545.1	DUF4145 domain-containing protein	-
ETK61_RS05275 (ETK61_05275)	rapF	995772..996944 (+)	1173	WP_043857176.1	Rap family tetratricopeptide repeat protein	Regulator
ETK61_RS05280 (ETK61_05280)	-	997216..997662 (-)	447	WP_041052807.1	hypothetical protein	-
ETK61_RS05285 (ETK61_05285)	-	997812..998303 (+)	492	WP_017695410.1	YhcN/YlaJ family sporulation lipoprotein	-
ETK61_RS05295 (ETK61_05295)	yhcQ	999323..999984 (-)	662	Protein_967	spore coat protein	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 46140.63 Da
• Isoelectric Point: 5.8726

>NTDB_id=300183 ETK61_RS05275 WP_043857176.1 995772..996944(+) (rapF) [Bacillus subtilis strain SRCM103612]
MRGVLDKDKIPYDVVTKKLNEWYTHIKNDDLEKAKQIKKEVEEDLKKMEESKDALLYYQLLEFRHELLVNYMNSEKTEEL
KSSYLAMKKLEDQGNVTGMLEYYFHFFMGMYEFRRKKLTAAITSYRKAEAKLSEVDDEIEKAEFFFKVSYVYYYMKQTYF
SLNYAYRALEIYQRYDDYFIQRLRCQFVLGGNFIDSLEYEKALDTFMEALKIAEEIKIDYLIGMAHINIGICFDELKDYK
NASSHLKKALDLLEVSDHSFVAKTLFILTHVKIKQGDKESAGVYFQKGHEFVKKTNDAEYNAKFKILEGLYFSNGEYELI
SEAFAYFDSMKMYADLENYAVEVAQFFHRKQDFQRSSEYYMLSVEARNKIKKGEIINETQSGHIGSSGVN

Nucleotide

• Length: 1173 bp

>NTDB_id=300183 ETK61_RS05275 WP_043857176.1 995772..996944(+) (rapF) [Bacillus subtilis strain SRCM103612]
TTGCGAGGTGTTTTAGATAAAGATAAAATTCCATATGATGTAGTTACAAAAAAATTAAACGAATGGTACACCCATATAAA
AAATGATGATCTTGAAAAAGCTAAACAAATAAAAAAAGAAGTTGAAGAAGATCTAAAAAAAATGGAAGAAAGTAAAGATG
CTTTACTATATTATCAATTGCTTGAATTCCGCCACGAATTGTTGGTCAATTACATGAATTCAGAAAAGACAGAAGAGTTG
AAAAGTTCATATCTAGCTATGAAAAAATTGGAGGACCAGGGCAATGTTACTGGAATGTTGGAATATTATTTTCATTTCTT
TATGGGGATGTATGAATTCAGAAGAAAAAAACTAACTGCGGCAATAACTTCATATAGAAAAGCAGAAGCTAAATTAAGTG
AAGTAGATGATGAGATTGAAAAAGCAGAATTCTTTTTTAAAGTATCATATGTTTATTACTATATGAAGCAAACATACTTT
TCGCTTAACTATGCCTATAGAGCTCTTGAAATATATCAAAGGTATGATGATTATTTTATACAGAGATTAAGATGTCAATT
TGTATTAGGTGGAAACTTTATTGACTCCCTAGAATATGAAAAGGCATTGGATACATTTATGGAAGCGTTAAAAATTGCTG
AAGAAATTAAAATTGATTATTTAATTGGGATGGCACACATCAACATAGGTATTTGCTTTGATGAGTTAAAAGATTACAAA
AATGCATCAAGTCATCTAAAAAAGGCGTTGGATTTGTTAGAGGTTAGCGATCACAGTTTTGTTGCGAAAACTCTTTTTAT
TTTAACACATGTAAAGATCAAGCAAGGTGACAAAGAATCAGCTGGTGTCTATTTTCAAAAAGGACATGAGTTCGTAAAAA
AAACAAATGACGCTGAATATAATGCTAAATTTAAAATATTAGAAGGACTTTATTTTTCAAATGGTGAATATGAATTGATT
AGTGAGGCTTTTGCATATTTTGATTCAATGAAAATGTATGCAGATTTAGAGAACTATGCTGTTGAAGTGGCGCAATTTTT
TCACCGAAAACAGGATTTTCAACGCTCAAGTGAATATTATATGTTGAGTGTTGAAGCAAGAAACAAAATTAAAAAAGGAG
AGATTATTAATGAAACTCAGTCGGGTCATATTGGCAGTAGCGGTGTTAACTAG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (9-69)

• Tetratricopeptide repeat (TPR_12) (198-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	38.095	96.923	0.369
rapC	Bacillus subtilis subsp. subtilis str. 168	37.302	96.923	0.362