Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SP70585_RS06235 Genome accession   NC_012468
Coordinates   1162515..1164182 (-) Length   555 a.a.
NCBI ID   WP_000923596.1    Uniprot ID   -
Organism   Streptococcus pneumoniae 70585     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1157515..1169182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP70585_RS12530 - 1157681..1158466 (-) 786 Protein_1185 IS5 family transposase -
  SP70585_RS06210 (SP70585_1247) - 1158474..1158776 (-) 303 WP_000590559.1 PTS sugar transporter subunit IIB -
  SP70585_RS06215 (SP70585_1248) - 1158814..1159290 (-) 477 Protein_1187 PTS sugar transporter subunit IIA -
  SP70585_RS13955 (SP70585_1249) - 1159470..1159802 (+) 333 WP_000693383.1 hypothetical protein -
  SP70585_RS06225 (SP70585_1250) lepA 1159883..1161706 (-) 1824 WP_001047204.1 translation elongation factor 4 -
  SP70585_RS06230 (SP70585_1251) - 1161785..1162513 (-) 729 WP_000133339.1 metallophosphoesterase family protein -
  SP70585_RS06235 (SP70585_1252) recN 1162515..1164182 (-) 1668 WP_000923596.1 DNA repair protein RecN Machinery gene
  SP70585_RS06240 (SP70585_1253) - 1164189..1164620 (-) 432 WP_001034415.1 arginine repressor -
  SP70585_RS06245 (SP70585_1254) - 1164613..1165428 (-) 816 WP_001041076.1 TlyA family RNA methyltransferase -
  SP70585_RS06250 (SP70585_1255) - 1165421..1166296 (-) 876 WP_000743818.1 polyprenyl synthetase family protein -
  SP70585_RS06255 (SP70585_1256) - 1166293..1166505 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  SP70585_RS06260 (SP70585_1257) xseA 1166483..1167823 (-) 1341 WP_000417465.1 exodeoxyribonuclease VII large subunit -
  SP70585_RS06265 (SP70585_1258) udk 1167951..1168589 (-) 639 WP_001181378.1 uridine kinase -
  SP70585_RS06270 (SP70585_1259) - 1168697..1168999 (-) 303 WP_000985093.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62865.32 Da        Isoelectric Point: 4.6798

>NTDB_id=30018 SP70585_RS06235 WP_000923596.1 1162515..1164182(-) (recN) [Streptococcus pneumoniae 70585]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRTIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLDLNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNKMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=30018 SP70585_RS06235 WP_000923596.1 1162515..1164182(-) (recN) [Streptococcus pneumoniae 70585]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAACTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGATCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCCATGAATGACATGGAAAGTGTCGAAGAGTATGACCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATAAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44

Multiple sequence alignment