Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ETK61_RS03135 Genome accession   NZ_CP035406
Coordinates   588958..589599 (+) Length   213 a.a.
NCBI ID   WP_014478974.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103612     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 583958..594599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK61_RS03105 (ETK61_03105) ydfE 585145..585768 (-) 624 WP_129137474.1 flavin reductase family protein -
  ETK61_RS03110 (ETK61_03110) ydfF 585858..586538 (+) 681 WP_017695971.1 winged helix-turn-helix domain-containing protein -
  ETK61_RS03115 (ETK61_03115) ydfG 586619..587062 (-) 444 WP_014475936.1 carboxymuconolactone decarboxylase family protein -
  ETK61_RS03120 (ETK61_03120) - 587149..587328 (-) 180 WP_017695972.1 hypothetical protein -
  ETK61_RS03125 (ETK61_03125) - 587325..587474 (-) 150 WP_017695973.1 hypothetical protein -
  ETK61_RS03130 (ETK61_03130) ydfH 587742..588965 (+) 1224 WP_033881070.1 two-component system sensor histidine kinase YdfH -
  ETK61_RS03135 (ETK61_03135) vraR 588958..589599 (+) 642 WP_014478974.1 two-component system response regulator YdfI Regulator
  ETK61_RS03140 (ETK61_03140) pleJ 589715..591889 (+) 2175 WP_129137475.1 MMPL family transporter -
  ETK61_RS03145 (ETK61_03145) cesA 592302..593204 (-) 903 WP_003234180.1 carboxylesterase -
  ETK61_RS03150 (ETK61_03150) ydfK 593407..594096 (-) 690 WP_015252719.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24004.93 Da        Isoelectric Point: 5.1938

>NTDB_id=300175 ETK61_RS03135 WP_014478974.1 588958..589599(+) (vraR) [Bacillus subtilis strain SRCM103612]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRSETQLTEKEVIVLKAI
AKGLKSKAIAFDLDVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=300175 ETK61_RS03135 WP_014478974.1 588958..589599(+) (vraR) [Bacillus subtilis strain SRCM103612]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTCAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAGTGAGACGCAGCTGACGGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGACGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.264

99.531

0.371

Multiple sequence alignment