Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ETK61_RS02445 Genome accession   NZ_CP035406
Coordinates   477190..477624 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SRCM103612     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 472190..482624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK61_RS02415 (ETK61_02415) ydaD 472846..473706 (+) 861 WP_129137457.1 SDR family oxidoreductase -
  ETK61_RS02420 (ETK61_02420) lyxE 473722..474218 (+) 497 Protein_432 D-lyxose ketol-isomerase -
  ETK61_RS02425 (ETK61_02425) ydaF 474307..474858 (+) 552 WP_017697339.1 GNAT family protein -
  ETK61_RS02430 (ETK61_02430) ydaG 474936..475358 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  ETK61_RS02435 (ETK61_02435) amj 475861..476670 (+) 810 WP_129137458.1 lipid II flippase Amj -
  ETK61_RS02440 (ETK61_02440) ydzA 476715..477005 (-) 291 WP_017697340.1 DUF3817 domain-containing protein -
  ETK61_RS02445 (ETK61_02445) lrpC 477190..477624 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  ETK61_RS02450 (ETK61_02450) topB 477689..479872 (+) 2184 WP_041336817.1 DNA topoisomerase III -
  ETK61_RS02455 (ETK61_02455) - 479934..481083 (-) 1150 Protein_439 IS3 family transposase -
  ETK61_RS02460 (ETK61_02460) ephJ 481364..482452 (+) 1089 WP_129137459.1 lipoprotein YdaJ -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=300174 ETK61_RS02445 WP_003246585.1 477190..477624(+) (lrpC) [Bacillus subtilis strain SRCM103612]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=300174 ETK61_RS02445 WP_003246585.1 477190..477624(+) (lrpC) [Bacillus subtilis strain SRCM103612]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1