Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CHC34_RS17510 Genome accession   NZ_CP030219
Coordinates   3555692..3556297 (-) Length   201 a.a.
NCBI ID   WP_053530142.1    Uniprot ID   -
Organism   Salmonella enterica strain SA20021456     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3550692..3561297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHC34_RS17495 (CHC34_18305) helD 3550909..3552963 (-) 2055 WP_063390310.1 DNA helicase IV -
  CHC34_RS17500 (CHC34_18310) - 3553087..3553533 (+) 447 WP_001261216.1 YccF domain-containing protein -
  CHC34_RS17505 (CHC34_18315) yccS 3553552..3555705 (+) 2154 WP_063390309.1 YccS family putative transporter -
  CHC34_RS17510 (CHC34_18320) sxy/tfoX 3555692..3556297 (-) 606 WP_053530142.1 TfoX/Sxy family DNA transformation protein Regulator
  CHC34_RS17515 (CHC34_18325) sulA 3556514..3557023 (+) 510 WP_023247035.1 SOS-induced cell division inhibitor SulA -
  CHC34_RS17520 (CHC34_18330) ompA 3557380..3558432 (+) 1053 WP_063390952.1 porin OmpA -
  CHC34_RS17525 (CHC34_18335) matP 3558504..3558956 (-) 453 WP_154807816.1 macrodomain Ter protein MatP -
  CHC34_RS17530 (CHC34_18340) - 3559142..3560902 (+) 1761 WP_053509640.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23129.84 Da        Isoelectric Point: 9.0103

>NTDB_id=300172 CHC34_RS17510 WP_053530142.1 3555692..3556297(-) (sxy/tfoX) [Salmonella enterica strain SA20021456]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEQSVPYCVKHPPVWLTFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRVLGAKMCWLRLRQSN
PLLTVKVLYALEGAIAGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=300172 CHC34_RS17510 WP_053530142.1 3555692..3556297(-) (sxy/tfoX) [Salmonella enterica strain SA20021456]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAGTATCGATCCTT
ATTCGGCAGCTATAGTCTGACCGTGGAAGATACCGTCTTTGCGATGGTGGCTAACGGCGAGCTTTATCTCCGCGCCTGTG
AGCAAAGCGTACCCTATTGTGTGAAGCATCCTCCCGTCTGGCTCACATTTATGAAGTGTGGGCGCCCTGTTATGCTCAAC
TATTATCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAACTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGGCTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAGAATATGTTACGCGTACTGGGTGCAAAAATGTGCTGGCTAAGGTTGCGACAAAGTAAT
CCTTTGCTGACGGTAAAAGTTCTGTATGCGTTAGAAGGCGCAATTGCTGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGATTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

76.884

99.005

0.761

Multiple sequence alignment