Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CHD36_RS14835 Genome accession   NZ_CP030217
Coordinates   2858043..2858648 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain SA20075157     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2853043..2863648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHD36_RS14820 (CHD36_14810) helD 2853260..2855314 (-) 2055 WP_023137047.1 DNA helicase IV -
  CHD36_RS14825 (CHD36_14815) - 2855438..2855884 (+) 447 WP_001261222.1 YccF domain-containing protein -
  CHD36_RS14830 (CHD36_14820) yccS 2855903..2858056 (+) 2154 WP_001726973.1 YccS family putative transporter -
  CHD36_RS14835 (CHD36_14825) sxy/tfoX 2858043..2858648 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  CHD36_RS14840 (CHD36_14830) sulA 2858865..2859374 (+) 510 WP_000288730.1 SOS-induced cell division inhibitor SulA -
  CHD36_RS14845 (CHD36_14835) ompA 2859731..2860783 (+) 1053 WP_001562588.1 porin OmpA -
  CHD36_RS14850 (CHD36_14840) matP 2860855..2861307 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  CHD36_RS14855 (CHD36_14845) - 2861493..2863253 (+) 1761 WP_079900562.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=300149 CHD36_RS14835 WP_001202375.1 2858043..2858648(-) (sxy/tfoX) [Salmonella enterica strain SA20075157]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=300149 CHD36_RS14835 WP_001202375.1 2858043..2858648(-) (sxy/tfoX) [Salmonella enterica strain SA20075157]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGTGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment