Detailed information NTG0300096

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: ETK49_RS13485
• Genome accession: NZ_CP035405
• Coordinates: 2573838..2574275 (-)
• Length: 145 a.a.
• NCBI ID: WP_009327905.1
• Uniprot ID: Q8VQ70
• Organism: Bacillus licheniformis strain SRCM103608
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2568838..2579275

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ETK49_RS13435 (ETK49_13435)	sinI	2569013..2569189 (+)	177	WP_003183444.1	anti-repressor SinI family protein	Regulator
ETK49_RS13440 (ETK49_13440)	sinR	2569223..2569558 (+)	336	WP_025804940.1	helix-turn-helix domain-containing protein	Regulator
ETK49_RS13445 (ETK49_13445)	-	2569663..2570457 (-)	795	WP_003183447.1	TasA family protein	-
ETK49_RS13450 (ETK49_13450)	-	2570531..2571115 (-)	585	WP_003183449.1	signal peptidase I	-
ETK49_RS13455 (ETK49_13455)	tapA	2571112..2571840 (-)	729	WP_003183451.1	amyloid fiber anchoring/assembly protein TapA	-
ETK49_RS13460 (ETK49_13460)	-	2572150..2572437 (+)	288	WP_223307118.1	YqzG/YhdC family protein	-
ETK49_RS13465 (ETK49_13465)	-	2572461..2572643 (-)	183	WP_003183456.1	YqzE family protein	-
ETK49_RS13470 (ETK49_13470)	comGG	2572732..2573097 (-)	366	WP_003183459.1	competence type IV pilus minor pilin ComGG	-
ETK49_RS13475 (ETK49_13475)	comGF	2573110..2573598 (-)	489	WP_011201694.1	competence type IV pilus minor pilin ComGF	-
ETK49_RS13480 (ETK49_13480)	comGE	2573507..2573854 (-)	348	WP_009327907.1	competence type IV pilus minor pilin ComGE	-
ETK49_RS13485 (ETK49_13485)	comGD	2573838..2574275 (-)	438	WP_009327905.1	competence type IV pilus minor pilin ComGD	Machinery gene
ETK49_RS13490 (ETK49_13490)	comGC	2574281..2574574 (-)	294	WP_003183466.1	competence type IV pilus major pilin ComGC	Machinery gene
ETK49_RS13495 (ETK49_13495)	comGB	2574588..2575622 (-)	1035	WP_011198115.1	competence type IV pilus assembly protein ComGB	Machinery gene
ETK49_RS13500 (ETK49_13500)	comGA	2575612..2576676 (-)	1065	WP_003183477.1	competence type IV pilus ATPase ComGA	Machinery gene
ETK49_RS13505 (ETK49_13505)	-	2576833..2577672 (-)	840	WP_003183480.1	STAS domain-containing protein	-
ETK49_RS13515 (ETK49_13515)	-	2577914..2578291 (-)	378	WP_003183482.1	Spx/MgsR family RNA polymerase-binding regulatory protein	-
ETK49_RS13520 (ETK49_13520)	-	2578500..2578745 (+)	246	WP_003183483.1	DUF2626 domain-containing protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16249.07 Da
• Isoelectric Point: 9.6739

>NTDB_id=300096 ETK49_RS13485 WP_009327905.1 2573838..2574275(-) (comGD) [Bacillus licheniformis strain SRCM103608]
MNQKGFTLLESLTVLMIGSIMFSLLFALLPPIYEKRIVQHFVSQLEEDLLYAQQTALVRHTTVKVQFDFAGCRYIMKHSD
EGSSPELVRTYSCNIAIKKSTLKPILTFNPSGVPNQGGKIVIDTQHASFILTIYLGSGKINVQKK

Nucleotide

• Length: 438 bp

>NTDB_id=300096 ETK49_RS13485 WP_009327905.1 2573838..2574275(-) (comGD) [Bacillus licheniformis strain SRCM103608]
ATGAATCAAAAAGGATTTACGCTTTTGGAAAGTTTAACTGTATTGATGATCGGTTCTATTATGTTCTCTCTTCTCTTTGC
TCTACTGCCTCCCATTTATGAAAAAAGAATCGTTCAGCACTTTGTCTCACAGCTTGAAGAGGATTTGCTTTACGCTCAGC
AGACGGCTCTCGTCCGCCATACGACGGTTAAGGTGCAGTTTGACTTTGCCGGCTGCCGCTATATCATGAAGCATTCGGAC
GAAGGCTCATCGCCTGAACTGGTCAGGACATACAGCTGCAATATCGCAATCAAAAAGTCGACGCTCAAACCAATTCTTAC
TTTTAATCCAAGCGGTGTTCCGAATCAAGGGGGAAAGATCGTGATCGATACACAGCATGCCTCTTTTATACTGACGATCT
ATTTAGGAAGCGGAAAGATTAATGTTCAAAAAAAATAA

Domains

Predicted by InterProScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (2-25)

3D structure

• AlphaFold DB: Q8VQ70

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Bacillus subtilis subsp. subtilis str. 168	39.86	98.621	0.393