Detailed information NTG0300089

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: ETK49_RS12675
• Genome accession: NZ_CP035405
• Coordinates: 2433160..2434290 (-)
• Length: 376 a.a.
• NCBI ID: WP_009327959.1
• Uniprot ID: Q65HV9
• Organism: Bacillus licheniformis strain SRCM103608
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2428160..2439290

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ETK49_RS12655 (ETK49_12655)	-	2429349..2429693 (-)	345	WP_095646468.1	hypothetical protein	-
ETK49_RS12660 (ETK49_12660)	-	2429956..2432142 (-)	2187	WP_003183125.1	RNA ligase	-
ETK49_RS12665 (ETK49_12665)	-	2432269..2432706 (-)	438	WP_003183127.1	Hsp20/alpha crystallin family protein	-
ETK49_RS12670 (ETK49_12670)	-	2432865..2433170 (-)	306	WP_003183128.1	hypothetical protein	-
ETK49_RS12675 (ETK49_12675)	rapC	2433160..2434290 (-)	1131	WP_009327959.1	Rap family tetratricopeptide repeat protein	Regulator
ETK49_RS12680 (ETK49_12680)	-	2434522..2434959 (-)	438	WP_003183133.1	peptidylprolyl isomerase	-
ETK49_RS12685 (ETK49_12685)	-	2435296..2436192 (+)	897	WP_011198086.1	DUF1002 domain-containing protein	-
ETK49_RS12690 (ETK49_12690)	-	2436189..2437049 (-)	861	WP_003183139.1	poly-gamma-glutamate hydrolase family protein	-
ETK49_RS12695 (ETK49_12695)	lysA	2437288..2438607 (-)	1320	WP_003183141.1	diaminopimelate decarboxylase	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44264.11 Da
• Isoelectric Point: 4.7199

>NTDB_id=300089 ETK49_RS12675 WP_009327959.1 2433160..2434290(-) (rapC) [Bacillus licheniformis strain SRCM103608]
MSVKIPSTAVGVKINDWYNAIRKFNVTDAEMLKAEIEREISQMEEDQDLLLYYALMEFRHRIMLDYVKPLEEGETPPDFS
EILKDIEDEQGKLTGLLEYYFNFFRGMYEYKNHDYIKAISFYRRAEKKLLHVEDEIERAEFHFKMAEVFYHMKQSHVSMN
YALQAIETYQAHETYTVRRIQCEFVIAGNYDDLESNEKALSHLEKALKLSQQEGQLILEGHTYYNLGNCYYKMGDFDQAA
EYFNRAAAIYQEESSDILPKAFFSLALAYFKLKQLEKADDALNKGIDIARRSDDAIYLSKFHFLKALYVDDDGRAPMLET
FQLLGSKKMYPDIEDLALEAAEYYNEIGRLSDSVYFYQTVFSARKQMKKGDWSYEI

Nucleotide

• Length: 1131 bp

>NTDB_id=300089 ETK49_RS12675 WP_009327959.1 2433160..2434290(-) (rapC) [Bacillus licheniformis strain SRCM103608]
GTGAGCGTAAAAATCCCATCGACGGCAGTCGGCGTAAAAATTAATGACTGGTATAACGCGATACGTAAATTCAACGTCAC
GGACGCCGAAATGCTGAAGGCAGAAATTGAGCGCGAAATTTCTCAAATGGAAGAGGATCAAGACTTATTATTGTATTACG
CCTTAATGGAATTCAGACACAGAATCATGCTTGATTACGTAAAACCTTTGGAAGAAGGCGAAACCCCGCCTGACTTTTCT
GAAATATTAAAAGATATCGAAGATGAACAAGGAAAGCTGACAGGCCTGCTCGAATATTATTTTAACTTTTTTAGAGGGAT
GTATGAATATAAAAACCATGATTATATTAAAGCGATCTCTTTTTACAGGCGCGCCGAAAAAAAGCTGCTGCACGTCGAGG
ACGAAATAGAGAGAGCCGAGTTTCATTTTAAAATGGCTGAAGTGTTTTATCATATGAAACAGAGCCATGTGTCGATGAAC
TATGCGCTTCAAGCGATTGAAACCTATCAGGCGCATGAAACCTACACGGTTCGGAGAATCCAATGCGAGTTCGTCATCGC
AGGGAACTATGACGATTTAGAGTCGAATGAAAAAGCGCTGTCACATCTTGAAAAGGCGCTGAAGCTTTCACAGCAAGAAG
GCCAGCTCATATTGGAAGGACACACCTATTACAATTTGGGAAACTGCTATTATAAGATGGGGGATTTCGATCAGGCAGCC
GAGTACTTCAACAGGGCTGCTGCGATTTATCAAGAAGAGTCATCAGATATTCTTCCAAAAGCGTTTTTCAGTCTTGCACT
TGCATATTTCAAGTTGAAGCAGCTGGAAAAGGCGGATGACGCGTTAAACAAAGGAATTGACATCGCCCGCCGATCAGACG
ATGCGATCTACCTTTCAAAATTTCATTTTTTAAAAGCTTTGTATGTTGATGATGACGGCAGGGCTCCAATGCTGGAGACA
TTTCAGCTGCTCGGGTCAAAAAAGATGTATCCCGATATTGAGGACTTGGCATTGGAAGCAGCTGAATACTATAATGAAAT
TGGGCGCTTGAGCGACTCTGTTTATTTCTATCAAACGGTATTCAGTGCTCGAAAACAAATGAAAAAAGGGGACTGGTCGT
ATGAAATCTAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_8) (260-290)

• Tetratricopeptide repeat (TPR_12) (190-252)

3D structure

• AlphaFold DB: Q65HV9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	47.745	100	0.479
rapF	Bacillus subtilis subsp. subtilis str. 168	44.619	100	0.452