Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CHD70_RS18435 Genome accession   NZ_CP030203
Coordinates   3408107..3408712 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain SA20083530     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3403107..3413712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHD70_RS18420 (CHD70_18430) helD 3403324..3405378 (-) 2055 WP_114047238.1 DNA helicase IV -
  CHD70_RS18425 (CHD70_18435) - 3405502..3405948 (+) 447 WP_114047239.1 YccF domain-containing protein -
  CHD70_RS18430 (CHD70_18440) yccS 3405967..3408120 (+) 2154 WP_114047240.1 YccS family putative transporter -
  CHD70_RS18435 (CHD70_18445) sxy/tfoX 3408107..3408712 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  CHD70_RS18440 (CHD70_18450) sulA 3408929..3409438 (+) 510 WP_000288730.1 SOS-induced cell division inhibitor SulA -
  CHD70_RS18445 (CHD70_18455) ompA 3409795..3410847 (+) 1053 WP_001562588.1 porin OmpA -
  CHD70_RS18450 (CHD70_18460) matP 3410919..3411371 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  CHD70_RS18455 (CHD70_18465) - 3411557..3413317 (+) 1761 WP_000156458.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=300064 CHD70_RS18435 WP_001202375.1 3408107..3408712(-) (sxy/tfoX) [Salmonella enterica strain SA20083530]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=300064 CHD70_RS18435 WP_001202375.1 3408107..3408712(-) (sxy/tfoX) [Salmonella enterica strain SA20083530]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACAGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment