Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   ETK49_RS06270 Genome accession   NZ_CP035405
Coordinates   1223921..1227313 (+) Length   1130 a.a.
NCBI ID   WP_025805595.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SRCM103608     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1218921..1232313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK49_RS06260 (ETK49_06260) addA 1218985..1222677 (+) 3693 WP_003180429.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  ETK49_RS06265 (ETK49_06265) sbcD 1222743..1223924 (+) 1182 WP_003180431.1 exonuclease subunit SbcD -
  ETK49_RS06270 (ETK49_06270) sbcC 1223921..1227313 (+) 3393 WP_025805595.1 exonuclease subunit SbcC Machinery gene
  ETK49_RS06275 (ETK49_06275) - 1227357..1227575 (-) 219 WP_003180435.1 spore germination protein -
  ETK49_RS06280 (ETK49_06280) - 1227631..1228014 (-) 384 WP_003180437.1 spore germination protein GerPE -
  ETK49_RS06285 (ETK49_06285) - 1228011..1228193 (-) 183 WP_003180439.1 hypothetical protein -
  ETK49_RS06290 (ETK49_06290) - 1228190..1228795 (-) 606 WP_003180441.1 spore germination protein GerPC -
  ETK49_RS06295 (ETK49_06295) - 1228816..1229058 (-) 243 WP_003180443.1 spore germination protein GerPB -
  ETK49_RS06300 (ETK49_06300) - 1229070..1229291 (-) 222 WP_003180445.1 spore germination protein -
  ETK49_RS06305 (ETK49_06305) - 1229473..1229766 (+) 294 WP_009328891.1 DUF3784 domain-containing protein -
  ETK49_RS06310 (ETK49_06310) - 1229848..1230027 (-) 180 WP_011197747.1 aspartyl-phosphate phosphatase Spo0E family protein -
  ETK49_RS06315 (ETK49_06315) - 1230194..1231267 (-) 1074 WP_016885922.1 CotH kinase family protein -
  ETK49_RS06320 (ETK49_06320) - 1231433..1231939 (+) 507 WP_009328889.1 hypothetical protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128991.67 Da        Isoelectric Point: 5.4261

>NTDB_id=300041 ETK49_RS06270 WP_025805595.1 1223921..1227313(+) (sbcC) [Bacillus licheniformis strain SRCM103608]
MKPISLSIKGLHSFRQEQVIDFERLCDAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDELAVSFTF
KLQTGHETAYKVERVFKRTDAVKVKTSICRFIEMKEEQIVLADKANEVNRKIEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRQMLQRLFNLEQYGDRLVKKLKKQAQTAQARKNEMLAEQAGLGDAGEEALKQAEQHLEEAESLLQSKKRERDAEA
QRFAEYQEIWNLQQEKESYLKKEAELLKKQEQIREKESRLHLAETANTLKPYADALLAAREDAERAHREEKQAREQLEQY
EELHKKTEREYEDFRRLKNEKEPELLKQEEQLTALKEIENKRLAAQAEAEKKQREQRLKEEEIKHAADELAKVKSLLERG
TAKQNQLKAELKSVQVSSEERKNCRNANQLAFHIQQLNNDAALEKERLGQQETLIKELQQEQQAVDQKVKAETERIEALF
AAVERAYALVCETDRSLSETIRVASQKKEEIAAKREQANRDQLAIELAKQLKDGEPCPVCGSVHHEMPARVGIESLSFKE
ADSELEKTEAIIAEAGALAQEFLSAKVALEQQSDHLVSECPFLVKSKHELPETAASIEEGTIPERYNRISFEWKGIRQDL
AETKSRMSKLLHTYKELCKKRDQISERLSHEEKERNRLQNRVGELNDQLNERRKSFGEQFDGLSYEQAEKWQKTIEEKDL
AAEEFEKRIETSVGFLTKHEQQKEKLTERLFALDKEKLDLRYAVETLNKEINDYQKELMGYPDTAAIDKKLQDVKTQLAK
LHEQEQTLYGRLKETESEVSRLRGQTKGCELALREAEARLAKAADIWQEKSGGTPFEKASEVKASILDRDDLARLKEDIQ
MHWDQTKQCESNIKRITEKLDGRSVSEESWEKAAVTKDKAEEAFSKALEERGAAGKALAVIRENHKRFKELEASLAEWQT
YIDRLDKLQAVFKGNSFVEYLAEEQLESVTRDASARLGELTRQRYAIEVDSEGGFVMRDDANGGVKRPVTSLSGGETFLT
SLALALALSAQIQLRGEYPLQFFFLDEGFGTLDQDLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPAEPSG
KGTAVSLEMI

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=300041 ETK49_RS06270 WP_025805595.1 1223921..1227313(+) (sbcC) [Bacillus licheniformis strain SRCM103608]
ATGAAGCCGATTTCTCTGTCTATTAAGGGGCTGCACAGTTTCAGGCAGGAGCAGGTGATCGATTTTGAGCGCCTGTGCGA
TGCCGGTGTATTCGGCATCTTCGGGCCGACCGGAAGCGGCAAGTCGTCGATTCTTGACGCGATGACTCTCGCTTTGTACG
GGAAGGTGGAGCGGGCCGCCAATAATACGCACGGCATTTTGAACCATGCCGAAGATGAGCTTGCCGTATCGTTTACGTTT
AAGCTGCAGACAGGCCATGAGACGGCTTATAAAGTGGAACGGGTCTTTAAGCGGACAGATGCCGTCAAGGTCAAAACATC
GATCTGCCGCTTCATTGAAATGAAAGAGGAACAAATCGTTCTGGCCGATAAAGCGAATGAAGTAAACCGGAAAATCGAAG
AGCTGCTGGGCTTGACGATCGACGATTTTACAAGGGCAGTCGTCCTGCCGCAAGGTAAATTCGCCGAATTTCTTTCCTTA
AAAGGAGCGGAGCGGCGGCAGATGCTTCAGCGCCTGTTCAACCTCGAACAATACGGGGACAGGCTCGTCAAAAAACTGAA
GAAACAGGCGCAAACAGCGCAGGCCAGAAAAAATGAGATGCTTGCCGAGCAGGCTGGATTGGGCGATGCGGGGGAAGAGG
CGCTGAAACAGGCGGAACAGCATCTCGAAGAAGCTGAAAGCCTTTTGCAAAGCAAGAAGCGCGAACGAGACGCAGAAGCG
CAGCGCTTTGCGGAGTATCAGGAGATTTGGAACCTGCAGCAGGAAAAAGAAAGCTATCTGAAAAAAGAGGCGGAGCTTTT
AAAGAAACAGGAACAGATTCGGGAAAAAGAAAGCCGCCTGCACCTCGCCGAAACGGCAAATACGCTCAAGCCTTATGCAG
ACGCCTTGCTGGCAGCGCGGGAAGATGCCGAACGCGCACACCGGGAAGAAAAACAAGCGCGGGAACAATTAGAACAATAT
GAAGAGCTTCATAAAAAAACAGAACGCGAGTACGAGGATTTCAGGCGTCTTAAAAATGAAAAGGAACCGGAGCTTCTCAA
GCAAGAAGAACAGCTCACCGCTTTGAAGGAAATTGAAAACAAGCGGCTAGCCGCACAGGCCGAGGCCGAGAAGAAGCAGC
GCGAACAGCGTTTGAAAGAAGAGGAAATCAAGCATGCGGCAGACGAGCTGGCCAAGGTGAAAAGTCTGCTTGAACGCGGG
ACAGCCAAGCAGAATCAGCTGAAAGCGGAGCTGAAATCTGTCCAGGTATCTAGCGAAGAGCGTAAAAACTGCCGAAATGC
CAATCAGCTTGCTTTTCACATTCAACAGCTTAACAACGATGCCGCTTTAGAAAAGGAACGGCTTGGTCAGCAGGAGACGC
TGATTAAAGAGCTCCAGCAAGAACAGCAAGCGGTGGATCAAAAGGTAAAAGCTGAAACCGAACGCATCGAGGCATTGTTT
GCCGCTGTCGAACGAGCGTACGCGCTCGTTTGCGAAACAGACAGATCGCTCTCTGAGACCATCCGTGTGGCATCTCAAAA
AAAAGAAGAGATTGCGGCAAAACGGGAACAGGCAAACCGTGATCAGCTGGCAATCGAACTGGCAAAGCAGCTCAAAGACG
GAGAGCCTTGTCCGGTCTGCGGATCTGTACATCATGAAATGCCCGCCCGCGTCGGCATAGAAAGCCTGTCCTTTAAAGAG
GCGGATTCCGAACTGGAGAAAACGGAAGCCATCATCGCTGAAGCCGGTGCGCTGGCTCAGGAGTTTCTCTCGGCCAAAGT
GGCACTCGAACAGCAATCCGACCACCTGGTGAGCGAATGCCCGTTTTTAGTCAAGAGCAAACATGAACTGCCTGAAACCG
CTGCATCGATAGAAGAAGGCACCATTCCCGAACGGTACAACCGCATCAGCTTTGAATGGAAAGGAATCAGACAGGATCTC
GCAGAGACAAAAAGCAGGATGTCCAAGCTCCTTCACACATATAAAGAGCTCTGCAAGAAACGCGACCAAATCAGCGAGCG
ACTCAGCCATGAAGAAAAGGAGCGTAACAGGCTTCAAAACCGCGTCGGCGAATTAAATGACCAGTTAAATGAACGCCGAA
AAAGCTTCGGCGAACAATTCGACGGCCTCTCTTATGAACAGGCTGAAAAATGGCAAAAAACGATTGAAGAAAAAGATCTG
GCCGCAGAGGAATTCGAAAAGCGTATCGAAACGAGCGTCGGCTTTCTCACAAAACATGAACAGCAAAAAGAGAAGCTCAC
CGAGCGCTTGTTTGCGCTTGATAAAGAAAAGCTCGACCTCCGCTATGCTGTCGAAACCCTTAATAAAGAAATAAACGATT
ATCAAAAAGAGCTGATGGGCTATCCCGATACAGCTGCAATCGACAAAAAGCTTCAAGACGTGAAAACGCAATTGGCCAAG
CTGCATGAGCAGGAACAGACGCTTTACGGACGGCTCAAAGAGACCGAATCCGAAGTCAGCCGTTTAAGAGGACAGACAAA
AGGGTGTGAGCTCGCTTTGCGTGAAGCGGAAGCAAGGCTTGCGAAAGCGGCGGACATCTGGCAGGAAAAATCCGGAGGTA
CACCGTTTGAAAAGGCCTCTGAAGTGAAAGCGAGCATTTTAGACCGCGATGATCTTGCCCGGCTGAAAGAAGACATTCAA
ATGCATTGGGATCAGACAAAACAGTGCGAGTCCAATATCAAGCGGATTACGGAAAAGCTTGATGGGAGATCGGTTTCTGA
GGAGAGTTGGGAAAAAGCCGCCGTCACGAAGGACAAAGCTGAGGAGGCATTCAGCAAAGCCTTGGAAGAAAGGGGCGCGG
CCGGCAAAGCTCTCGCCGTCATCCGCGAGAACCATAAAAGGTTTAAGGAACTTGAAGCATCATTGGCTGAATGGCAGACA
TACATCGACCGTCTTGATAAACTCCAAGCCGTCTTTAAAGGAAACAGCTTTGTTGAATACTTGGCAGAAGAGCAGCTTGA
AAGCGTCACAAGAGACGCATCTGCAAGACTCGGCGAACTGACAAGACAGAGGTATGCGATTGAAGTCGACTCAGAAGGCG
GTTTTGTGATGAGGGACGATGCCAACGGCGGAGTCAAGCGCCCTGTTACGAGTCTGTCAGGTGGGGAGACGTTTCTGACT
TCACTGGCGCTTGCGCTTGCACTTTCGGCACAGATCCAGCTTCGCGGAGAGTATCCGCTCCAATTCTTCTTTTTGGACGA
AGGGTTTGGCACGCTTGATCAGGATTTGCTGGATACGGTCGTGACCGCATTGGAGAAGCTTCAGTCTGACAATCTGTCGG
TCGGTGTGATCAGCCACGTTCAGGAACTTCGGGCCAGGCTGCCGAAGAAGCTGATTGTGCATCCGGCTGAACCAAGCGGC
AAAGGTACAGCCGTATCGCTTGAAATGATTTAA

Domains

Predicted by InterProScan.

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1002-1085)

AAA domain (AAA_23)

(5-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

56.614

100

0.568