Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SPH_RS03045 Genome accession   NC_010380
Coordinates   581582..582313 (+) Length   243 a.a.
NCBI ID   WP_000889919.1    Uniprot ID   A0A062WNF5
Organism   Streptococcus pneumoniae Hungary19A-6     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 576582..587313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPH_RS03020 (SPH_0624) dnaK 576766..578589 (+) 1824 WP_000034662.1 molecular chaperone DnaK -
  SPH_RS03025 - 578591..578947 (+) 357 WP_000114422.1 hypothetical protein -
  SPH_RS03030 (SPH_0625) dnaJ 579349..580485 (+) 1137 WP_001066301.1 molecular chaperone DnaJ -
  SPH_RS03035 (SPH_0626) - 580807..581094 (-) 288 WP_000777760.1 hypothetical protein -
  SPH_RS03040 (SPH_0627) - 581104..581514 (-) 411 WP_001278301.1 HIT family protein -
  SPH_RS03045 (SPH_0628) pptA 581582..582313 (+) 732 WP_000889919.1 ABC transporter ATP-binding protein Regulator
  SPH_RS03050 (SPH_0629) - 582310..583359 (+) 1050 WP_000653766.1 ABC transporter permease -
  SPH_RS03055 (SPH_0630) - 583527..583856 (-) 330 WP_000132572.1 hypothetical protein -
  SPH_RS03060 (SPH_0631) - 584132..584470 (+) 339 WP_000876676.1 LytTR family DNA-binding domain-containing protein -
  SPH_RS03065 (SPH_0632) comE/blpR 584475..585212 (+) 738 WP_001219147.1 response regulator transcription factor Regulator
  SPH_RS03070 (SPH_0633) - 585226..586566 (+) 1341 WP_001028044.1 sensor histidine kinase -
  SPH_RS03075 (SPH_0634) blpC 586608..586763 (-) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27012.49 Da        Isoelectric Point: 4.7737

>NTDB_id=29998 SPH_RS03045 WP_000889919.1 581582..582313(+) (pptA) [Streptococcus pneumoniae Hungary19A-6]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=29998 SPH_RS03045 WP_000889919.1 581582..582313(+) (pptA) [Streptococcus pneumoniae Hungary19A-6]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTAGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WNF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712

Multiple sequence alignment