Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CHE19_RS15925 Genome accession   NZ_CP030185
Coordinates   2986522..2987127 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain SA20094620     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2981522..2992127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHE19_RS15910 (CHE19_15905) helD 2981739..2983793 (-) 2055 WP_080193326.1 DNA helicase IV -
  CHE19_RS15915 (CHE19_15910) - 2983917..2984363 (+) 447 WP_001261222.1 YccF domain-containing protein -
  CHE19_RS15920 (CHE19_15915) yccS 2984382..2986535 (+) 2154 WP_079959530.1 YccS family putative transporter -
  CHE19_RS15925 (CHE19_15920) sxy/tfoX 2986522..2987127 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  CHE19_RS15930 (CHE19_15925) sulA 2987344..2987853 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  CHE19_RS15935 (CHE19_15930) ompA 2988210..2989262 (+) 1053 WP_001670727.1 porin OmpA -
  CHE19_RS15940 (CHE19_15935) matP 2989334..2989786 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  CHE19_RS15945 (CHE19_15940) - 2989972..2991732 (+) 1761 WP_000156448.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=299970 CHE19_RS15925 WP_001202375.1 2986522..2987127(-) (sxy/tfoX) [Salmonella enterica strain SA20094620]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=299970 CHE19_RS15925 WP_001202375.1 2986522..2987127(-) (sxy/tfoX) [Salmonella enterica strain SA20094620]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTCGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment