Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ETA57_RS15825 Genome accession   NZ_CP035404
Coordinates   3003576..3004355 (-) Length   259 a.a.
NCBI ID   WP_016886351.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SRCM103583     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2998576..3009355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA57_RS15795 (ETA57_15795) - 2998798..2999241 (+) 444 WP_048355991.1 helix-turn-helix transcriptional regulator -
  ETA57_RS15800 (ETA57_15800) - 2999345..2999752 (+) 408 WP_225315941.1 ImmA/IrrE family metallo-endopeptidase -
  ETA57_RS15805 (ETA57_15805) - 2999792..3001183 (+) 1392 WP_069500683.1 recombinase family protein -
  ETA57_RS15810 (ETA57_15810) - 3001199..3001560 (-) 362 Protein_3077 UPF0758 domain-containing protein -
  ETA57_RS15815 (ETA57_15815) - 3001615..3002187 (-) 573 WP_003184048.1 Maf family protein -
  ETA57_RS15820 (ETA57_15820) - 3002341..3003372 (-) 1032 WP_003184050.1 SPOR domain-containing protein -
  ETA57_RS15825 (ETA57_15825) comC 3003576..3004355 (-) 780 WP_016886351.1 A24 family peptidase Machinery gene
  ETA57_RS15830 (ETA57_15830) - 3004468..3005766 (-) 1299 WP_009329287.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ETA57_RS15835 (ETA57_15835) - 3005848..3008490 (-) 2643 WP_069500684.1 valine--tRNA ligase -
  ETA57_RS15840 (ETA57_15840) - 3008952..3009143 (+) 192 WP_003184058.1 hypothetical protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28117.93 Da        Isoelectric Point: 8.9928

>NTDB_id=299969 ETA57_RS15825 WP_016886351.1 3003576..3004355(-) (comC) [Bacillus licheniformis strain SRCM103583]
MKFDSARLITMFIFYLFTAGLVLGSFFNSAGRRIPEKISLIAPRSLCRVCKRQLGFSELIPVLSYLMQRGRCKGCQTPLS
IVYPAVELSAAILFAFAGMHVGHEGELVIVLALISLLLIVFVSDVTHMIIPDAVLCFFLPVFAVGRFLVPLEQWHSSLSG
AMAGGMLPLLTLLLTKGGIGWGDVKLFAVIGMALGSRLLVLAFFLSAAAGTVLGLIALLAGKLKKNEPMPFAPAILAGTL
TSCFYGEPMIEWYLQTAWW

Nucleotide


Download         Length: 780 bp        

>NTDB_id=299969 ETA57_RS15825 WP_016886351.1 3003576..3004355(-) (comC) [Bacillus licheniformis strain SRCM103583]
ATGAAATTTGATTCTGCGAGGTTGATAACGATGTTCATCTTTTACCTTTTTACGGCAGGTTTAGTGCTCGGCTCTTTTTT
TAATTCGGCCGGGCGCCGCATTCCTGAAAAGATATCATTGATTGCTCCGCGTTCCCTCTGCCGCGTCTGCAAAAGGCAGC
TGGGCTTCTCGGAGCTGATACCGGTTTTGTCCTATTTGATGCAGCGGGGGAGGTGCAAAGGATGTCAAACCCCGCTCTCG
ATCGTGTATCCGGCAGTTGAGCTCTCCGCCGCCATCCTGTTTGCGTTTGCCGGCATGCACGTTGGGCATGAGGGGGAGCT
GGTGATTGTGCTTGCTCTTATATCTCTGCTTTTGATCGTCTTTGTATCTGATGTGACACACATGATCATTCCGGATGCTG
TTCTTTGTTTTTTCCTGCCTGTCTTTGCCGTCGGACGATTCCTTGTTCCTCTGGAACAGTGGCACTCAAGTTTGAGCGGT
GCGATGGCCGGCGGTATGCTGCCCCTCTTGACGCTGCTTTTGACGAAAGGGGGGATCGGCTGGGGAGACGTAAAGCTGTT
TGCGGTAATCGGCATGGCGCTCGGCAGCCGCCTCCTCGTTCTCGCTTTTTTCCTCTCGGCAGCCGCAGGAACGGTGCTTG
GTCTTATTGCACTCCTGGCAGGCAAACTGAAGAAAAATGAACCAATGCCGTTTGCTCCCGCGATTCTGGCCGGGACGCTG
ACGAGCTGCTTCTATGGCGAACCAATGATCGAGTGGTACCTTCAAACGGCATGGTGGTGA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(19-100)

Type IV leader peptidase family (Peptidase_A24)

(112-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

48.347

93.436

0.452