Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   ETA57_RS10180 Genome accession   NZ_CP035404
Coordinates   1963692..1964123 (+) Length   143 a.a.
NCBI ID   WP_044790011.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SRCM103583     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1958692..1969123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA57_RS10160 (ETA57_10160) - 1958738..1959658 (+) 921 WP_021837473.1 dipeptidase -
  ETA57_RS10165 (ETA57_10165) tdh 1959783..1960826 (+) 1044 WP_085959523.1 L-threonine 3-dehydrogenase -
  ETA57_RS10170 (ETA57_10170) - 1960842..1962017 (+) 1176 WP_009328481.1 glycine C-acetyltransferase -
  ETA57_RS10175 (ETA57_10175) miaB 1962161..1963690 (+) 1530 WP_003181965.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ETA57_RS10180 (ETA57_10180) ymcA 1963692..1964123 (+) 432 WP_044790011.1 RicAFT regulatory complex protein RicA family protein Regulator
  ETA57_RS10185 (ETA57_10185) cotE 1964366..1964914 (+) 549 WP_003181968.1 outer spore coat protein CotE -
  ETA57_RS10190 (ETA57_10190) hexA 1965025..1967634 (+) 2610 WP_034291576.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16045.30 Da        Isoelectric Point: 5.0656

>NTDB_id=299931 ETA57_RS10180 WP_044790011.1 1963692..1964123(+) (ymcA) [Bacillus licheniformis strain SRCM103583]
MTLYTKKEIVAKARELAKMIAETEEVEFFKKAEAQINENAKITGIINQIKALQKQAVNFKHYEKHEALKQTEAKIDALQE
ELDEIPIIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKNSSPSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=299931 ETA57_RS10180 WP_044790011.1 1963692..1964123(+) (ymcA) [Bacillus licheniformis strain SRCM103583]
GTGACGCTTTATACGAAAAAAGAGATTGTTGCAAAAGCGCGGGAGCTCGCAAAAATGATTGCAGAAACGGAAGAAGTCGA
ATTTTTCAAAAAAGCGGAGGCACAGATTAATGAGAATGCCAAAATAACGGGCATAATCAACCAAATCAAAGCCCTGCAAA
AGCAAGCCGTCAACTTTAAACATTACGAAAAGCACGAAGCGCTTAAACAAACGGAAGCAAAGATTGACGCGCTTCAGGAA
GAGCTTGACGAGATTCCGATCATTCAAGAGTTCAGAGACTCCCAAATGGAAGTCAACGACCTTCTTCAGCTTGTCGCGCA
TACAATATCAAACCAAGTGACAAACGAGATCATCACATCGACCGGGGGAGACCTGCTGAAAGGCGAGACCGGTTCAAAAG
TGAAAAATTCATCACCGAGCTGTTCTCTATAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

86.014

100

0.86