Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LFZ28_RS15640 Genome accession   NZ_CP030175
Coordinates   2978285..2978890 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Milwaukee str. SA19950795     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2973285..2983890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFZ28_RS15625 (LFZ28_15620) helD 2973502..2975556 (-) 2055 WP_058108178.1 DNA helicase IV -
  LFZ28_RS15630 (LFZ28_15625) - 2975680..2976126 (+) 447 WP_001261222.1 YccF domain-containing protein -
  LFZ28_RS15635 (LFZ28_15630) yccS 2976145..2978298 (+) 2154 WP_000950881.1 YccS family putative transporter -
  LFZ28_RS15640 (LFZ28_15635) sxy/tfoX 2978285..2978890 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LFZ28_RS15645 (LFZ28_15640) sulA 2979107..2979616 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  LFZ28_RS15650 (LFZ28_15645) ompA 2979974..2981026 (+) 1053 WP_001670727.1 porin OmpA -
  LFZ28_RS15655 (LFZ28_15650) matP 2981098..2981550 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LFZ28_RS15660 (LFZ28_15655) - 2981736..2983496 (+) 1761 WP_058108177.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=299903 LFZ28_RS15640 WP_001202375.1 2978285..2978890(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Milwaukee str. SA19950795]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=299903 LFZ28_RS15640 WP_001202375.1 2978285..2978890(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Milwaukee str. SA19950795]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAATATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTCATGAAATGCGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTCGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCTAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment