Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ETA57_RS04245 Genome accession   NZ_CP035404
Coordinates   847274..847990 (+) Length   238 a.a.
NCBI ID   WP_009329065.1    Uniprot ID   A0ABX3I5L7
Organism   Bacillus licheniformis strain SRCM103583     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 842274..852990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA57_RS04225 (ETA57_04225) - 842742..843128 (+) 387 WP_003179739.1 DUF1992 domain-containing protein -
  ETA57_RS04230 (ETA57_04230) - 843190..843897 (+) 708 Protein_790 alanine:cation symporter family protein -
  ETA57_RS04235 (ETA57_04235) treP 844078..845490 (+) 1413 WP_069500302.1 PTS system trehalose-specific EIIBC component -
  ETA57_RS04240 (ETA57_04240) treC 845564..847252 (+) 1689 WP_069500303.1 alpha,alpha-phosphotrehalase -
  ETA57_RS04245 (ETA57_04245) treR 847274..847990 (+) 717 WP_009329065.1 trehalose operon repressor Regulator
  ETA57_RS04250 (ETA57_04250) - 848097..848789 (+) 693 WP_069500304.1 N-acetyltransferase -
  ETA57_RS04255 (ETA57_04255) - 848916..850241 (+) 1326 WP_129093886.1 NTTRR-F1 domain -
  ETA57_RS04260 (ETA57_04260) - 850461..852194 (+) 1734 WP_080618597.1 NTTRR-F1 domain -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27767.56 Da        Isoelectric Point: 5.8721

>NTDB_id=299884 ETA57_RS04245 WP_009329065.1 847274..847990(+) (treR) [Bacillus licheniformis strain SRCM103583]
MKINKYMMIYKQIAEQIDQSILNAGDILPSENDLAEQHDTSRETVRKALNVLAQNGYIQKIKGKGSVVLHREKMQFPVSG
LVSFKELSETLGKETSTTVHEFGLTHPDAYIQKQLRTSGDEEVWRVVRSRNINGERIILDKDYFIRKHVPLLTKEICEDS
IYQYLEDECGLVISYAHKEIVVEPCTAEDQEYLDLNGYEHIVVVKNFVFLDDTTLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=299884 ETA57_RS04245 WP_009329065.1 847274..847990(+) (treR) [Bacillus licheniformis strain SRCM103583]
ATGAAGATCAACAAGTATATGATGATTTACAAACAAATCGCGGAACAAATCGATCAAAGCATACTGAATGCCGGAGATAT
CCTGCCGTCTGAAAACGACCTTGCCGAACAGCACGACACCTCGAGGGAAACCGTTCGGAAAGCGCTGAACGTGCTTGCTC
AGAACGGATATATTCAGAAGATTAAAGGGAAGGGGTCAGTCGTGCTGCACAGGGAGAAAATGCAGTTCCCGGTTTCCGGT
TTGGTCAGCTTTAAGGAGCTTTCAGAAACGCTCGGAAAAGAGACAAGCACGACGGTCCATGAGTTCGGCTTGACGCATCC
GGACGCATATATTCAAAAGCAGCTCCGCACTTCCGGAGATGAAGAGGTATGGCGGGTTGTCAGGTCGCGGAACATCAACG
GAGAGCGTATCATCCTGGATAAAGACTATTTTATCCGCAAACACGTGCCGCTTTTAACGAAAGAAATATGCGAGGACTCG
ATCTATCAATACCTTGAAGATGAATGCGGGCTCGTCATCAGCTATGCTCATAAGGAAATTGTAGTCGAGCCATGTACGGC
AGAGGATCAAGAGTATTTGGATCTGAACGGATACGAGCACATTGTGGTCGTGAAAAATTTCGTTTTTCTTGATGATACGA
CCTTGTTTCAATATACGGAAAGCAGACACCGCCTTGATAAATTCCGGTTTGTCGATTTTGCAAGAAGAGAAAAGTAG

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

41.525

99.16

0.412