Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DQB71_RS09375 Genome accession   NZ_CP030174
Coordinates   1893520..1894116 (+) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae subsp. pneumoniae strain 11219     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1888520..1899116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQB71_RS09350 (DQB71_09360) - 1888712..1890469 (-) 1758 WP_016529118.1 AAA family ATPase -
  DQB71_RS09355 (DQB71_09365) matP 1890655..1891107 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  DQB71_RS09360 (DQB71_09370) ompA 1891239..1892309 (-) 1071 WP_002898408.1 porin OmpA -
  DQB71_RS09365 (DQB71_09375) sulA 1892662..1893171 (-) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  DQB71_RS09375 (DQB71_09385) sxy/tfoX 1893520..1894116 (+) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  DQB71_RS09380 (DQB71_09390) yccS 1894130..1896265 (-) 2136 WP_002898422.1 YccS family putative transporter -
  DQB71_RS09385 (DQB71_09395) - 1896283..1896729 (-) 447 WP_002898425.1 YccF domain-containing protein -
  DQB71_RS09390 (DQB71_09400) helD 1896854..1898908 (+) 2055 WP_009485779.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=299873 DQB71_RS09375 WP_004150836.1 1893520..1894116(+) (sxy/tfoX) [Klebsiella pneumoniae subsp. pneumoniae strain 11219]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=299873 DQB71_RS09375 WP_004150836.1 1893520..1894116(+) (sxy/tfoX) [Klebsiella pneumoniae subsp. pneumoniae strain 11219]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment