Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ETA15_RS19445 Genome accession   NZ_CP035403
Coordinates   3646861..3647994 (-) Length   377 a.a.
NCBI ID   WP_017696016.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103581     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3641861..3652994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS19420 (ETA15_19420) urtC 3642483..3643553 (-) 1071 WP_041055814.1 urea ABC transporter permease subunit UrtC -
  ETA15_RS19425 (ETA15_19425) urtB 3643565..3644467 (-) 903 WP_017696018.1 urea ABC transporter permease subunit UrtB -
  ETA15_RS19430 (ETA15_19430) urtA 3644500..3645756 (-) 1257 WP_129093481.1 urea ABC transporter substrate-binding protein -
  ETA15_RS19435 (ETA15_19435) csbD 3645964..3646152 (-) 189 WP_014481173.1 stress response protein CsbD -
  ETA15_RS19440 (ETA15_19440) - 3646226..3646705 (-) 480 WP_026113664.1 hypothetical protein -
  ETA15_RS19445 (ETA15_19445) rapC 3646861..3647994 (-) 1134 WP_017696016.1 response regulator aspartate phosphatase RapB Regulator
  ETA15_RS19450 (ETA15_19450) moaA 3648186..3649211 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  ETA15_RS19455 (ETA15_19455) fdhD 3649227..3650015 (-) 789 WP_014481178.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  ETA15_RS19460 (ETA15_19460) - 3650249..3650410 (-) 162 WP_003227706.1 hypothetical protein -
  ETA15_RS19465 (ETA15_19465) ywmD 3650505..3651179 (-) 675 WP_017696015.1 VWA domain-containing protein -
  ETA15_RS19470 (ETA15_19470) - 3651232..3651372 (-) 141 WP_014481180.1 hypothetical protein -
  ETA15_RS19475 (ETA15_19475) ywmC 3651503..3652186 (-) 684 WP_017696013.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45032.17 Da        Isoelectric Point: 4.7546

>NTDB_id=299850 ETA15_RS19445 WP_017696016.1 3646861..3647994(-) (rapC) [Bacillus subtilis strain SRCM103581]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALTVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQKNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=299850 ETA15_RS19445 WP_017696016.1 3646861..3647994(-) (rapC) [Bacillus subtilis strain SRCM103581]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTACTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAAGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(154-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.368

100

0.427
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424