Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ETA15_RS07395 Genome accession   NZ_CP035403
Coordinates   1394580..1395716 (+) Length   378 a.a.
NCBI ID   WP_010886491.1    Uniprot ID   Q00828
Organism   Bacillus subtilis strain SRCM103581     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1389580..1400716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS07375 (ETA15_07375) uxaA 1390029..1391522 (+) 1494 WP_041333913.1 altronate dehydratase family protein -
  ETA15_RS07380 (ETA15_07380) yjnA 1391561..1392325 (-) 765 WP_017697316.1 sulfite exporter TauE/SafE family protein -
  ETA15_RS07385 (ETA15_07385) bstD 1392550..1393014 (-) 465 WP_014479541.1 DinB family protein -
  ETA15_RS07390 (ETA15_07390) yjoB 1393163..1394434 (+) 1272 WP_041333910.1 ATPase YjoB -
  ETA15_RS07395 (ETA15_07395) rapC 1394580..1395716 (+) 1137 WP_010886491.1 response regulator aspartate phosphatase RapA Regulator
  ETA15_RS07400 (ETA15_07400) phrA 1395706..1395840 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  ETA15_RS07405 (ETA15_07405) yjpA 1395871..1396128 (-) 258 WP_041333908.1 YciI family protein -
  ETA15_RS07410 (ETA15_07410) xlyB 1396250..1397203 (+) 954 WP_041333906.1 N-acetylmuramoyl-L-alanine amidase -
  ETA15_RS07415 (ETA15_07415) yjqA 1397242..1397619 (-) 378 WP_014476529.1 PH domain-containing protein -
  ETA15_RS07420 (ETA15_07420) pghB 1397725..1398327 (+) 603 WP_041333904.1 poly-gamma-glutamate hydrolase family protein -
  ETA15_RS07425 (ETA15_07425) xpdC 1398404..1399240 (+) 837 WP_041333900.1 manganese catalase family protein -
  ETA15_RS07430 (ETA15_07430) xkdA 1399284..1399880 (-) 597 WP_015715727.1 ImmA/IrrE family metallo-endopeptidase -
  ETA15_RS07435 (ETA15_07435) xre 1400043..1400384 (-) 342 WP_017695142.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44974.16 Da        Isoelectric Point: 4.7611

>NTDB_id=299767 ETA15_RS07395 WP_010886491.1 1394580..1395716(+) (rapC) [Bacillus subtilis strain SRCM103581]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFGKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=299767 ETA15_RS07395 WP_010886491.1 1394580..1395716(+) (rapC) [Bacillus subtilis strain SRCM103581]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGGGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-293)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q00828

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.681

99.471

0.444
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418