Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ETA15_RS04770 Genome accession   NZ_CP035403
Coordinates   912776..913492 (+) Length   238 a.a.
NCBI ID   WP_129093298.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103581     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 907776..918492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS04740 (ETA15_04740) - 907798..907935 (+) 138 WP_129093297.1 hypothetical protein -
  ETA15_RS04745 (ETA15_04745) yflB 907954..908346 (+) 393 WP_003233692.1 DUF1992 domain-containing protein -
  ETA15_RS04750 (ETA15_04750) - 908471..908707 (+) 237 Protein_891 sodium:alanine symporter family protein -
  ETA15_RS04755 (ETA15_04755) - 908656..909390 (-) 735 Protein_892 spore germination protein -
  ETA15_RS04760 (ETA15_04760) treP 909584..910996 (+) 1413 WP_017697567.1 PTS system trehalose-specific EIIBC component -
  ETA15_RS04765 (ETA15_04765) treC 911067..912755 (+) 1689 WP_121591516.1 alpha,alpha-phosphotrehalase -
  ETA15_RS04770 (ETA15_04770) treR 912776..913492 (+) 717 WP_129093298.1 trehalose operon repressor Regulator
  ETA15_RS04775 (ETA15_04775) hypO 913632..914297 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27812.86 Da        Isoelectric Point: 7.9495

>NTDB_id=299743 ETA15_RS04770 WP_129093298.1 912776..913492(+) (treR) [Bacillus subtilis strain SRCM103581]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIKGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLKPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=299743 ETA15_RS04770 WP_129093298.1 912776..913492(+) (treR) [Bacillus subtilis strain SRCM103581]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAAGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAACTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGAAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGGAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(8-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416

Multiple sequence alignment