Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ETA15_RS04330 Genome accession   NZ_CP035403
Coordinates   823295..824425 (+) Length   376 a.a.
NCBI ID   WP_017695616.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103581     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 818295..829425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS04305 (ETA15_04305) - 818654..818920 (-) 267 WP_052470591.1 hypothetical protein -
  ETA15_RS04310 (ETA15_04310) yezA 818987..819193 (-) 207 WP_041056936.1 bacteriocin immunity protein -
  ETA15_RS04315 (ETA15_04315) atxF 819434..819889 (-) 456 WP_072557181.1 TIGR01741 family protein -
  ETA15_RS04320 (ETA15_04320) yeeF 819909..821918 (-) 2010 WP_129093284.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  ETA15_RS04325 (ETA15_04325) - 822130..823151 (+) 1022 Protein_807 hypothetical protein -
  ETA15_RS04330 (ETA15_04330) rapC 823295..824425 (+) 1131 WP_017695616.1 response regulator aspartate phosphatase RapH Regulator
  ETA15_RS04335 (ETA15_04335) phrH 824415..824588 (+) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  ETA15_RS04340 (ETA15_04340) yeeI 824748..825467 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ETA15_RS04345 (ETA15_04345) - 825601..826095 (+) 495 WP_069964033.1 spore coat protein -
  ETA15_RS04350 (ETA15_04350) yezE 826210..826794 (+) 585 WP_129093285.1 TetR/AcrR family transcriptional regulator -
  ETA15_RS04355 (ETA15_04355) - 826873..827045 (+) 173 Protein_813 nuclear transport factor 2 family protein -
  ETA15_RS04360 (ETA15_04360) - 827042..827423 (+) 382 Protein_814 hypothetical protein -
  ETA15_RS04365 (ETA15_04365) cotJA 827550..827798 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  ETA15_RS04370 (ETA15_04370) cotJB 827782..828045 (+) 264 WP_003219491.1 spore coat protein CotJB -
  ETA15_RS04375 (ETA15_04375) cotJC 828060..828629 (+) 570 WP_003233850.1 spore coat protein CotJC -
  ETA15_RS04380 (ETA15_04380) yesJ 828754..829296 (+) 543 WP_129093286.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44030.35 Da        Isoelectric Point: 5.8599

>NTDB_id=299742 ETA15_RS04330 WP_017695616.1 823295..824425(+) (rapC) [Bacillus subtilis strain SRCM103581]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEKALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=299742 ETA15_RS04330 WP_017695616.1 823295..824425(+) (rapC) [Bacillus subtilis strain SRCM103581]
TTGAGTCAAGCCATACCGTCTTCGCGTGTGGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGCAAATGGAAGAAGACCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTGGATTATTTGGAGCCGGGACAGCCTTACGGGAATCGCCCTACAGTGACA
GAACTTTTGGAAACAATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATATTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAACCATCCCTTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAAAAGGCGCTGGAATTGGCCATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.957

100

0.41
  rapF Bacillus subtilis subsp. subtilis str. 168

40.318

100

0.404

Multiple sequence alignment