Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   ETA15_RS00340 Genome accession   NZ_CP035403
Coordinates   61325..61555 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain SRCM103581     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 56325..66555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS00310 (ETA15_00310) ridA 56489..56866 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  ETA15_RS00315 (ETA15_00315) spoVG 57061..57354 (+) 294 WP_003218346.1 septation regulator SpoVG -
  ETA15_RS00320 (ETA15_00320) glmU 57547..58917 (+) 1371 WP_017696375.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  ETA15_RS00325 (ETA15_00325) prsS 58940..59893 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  ETA15_RS00330 (ETA15_00330) rplYB 59978..60592 (+) 615 WP_017696374.1 50S ribosomal protein L25/general stress protein Ctc -
  ETA15_RS00335 (ETA15_00335) pth 60699..61265 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  ETA15_RS00340 (ETA15_00340) subA/fin 61325..61555 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  ETA15_RS00345 (ETA15_00345) mfd 61625..65158 (+) 3534 WP_017696373.1 transcription-repair coupling factor -
  ETA15_RS00350 (ETA15_00350) spoVT 65294..65830 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=299722 ETA15_RS00340 WP_003243417.1 61325..61555(+) (subA/fin) [Bacillus subtilis strain SRCM103581]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=299722 ETA15_RS00340 WP_003243417.1 61325..61555(+) (subA/fin) [Bacillus subtilis strain SRCM103581]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment