Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BVDSYZ_RS07840 Genome accession   NZ_CP030150
Coordinates   1543932..1545068 (-) Length   378 a.a.
NCBI ID   WP_105322066.1    Uniprot ID   -
Organism   Bacillus velezensis strain DSYZ     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1531888..1578696 1543932..1545068 within 0


Gene organization within MGE regions


Location: 1531888..1578696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVDSYZ_RS07750 (BVDSYZ_07750) - 1531888..1533216 (+) 1329 WP_015417407.1 PhoH family protein -
  BVDSYZ_RS07755 (BVDSYZ_07755) - 1533211..1533687 (-) 477 WP_062623336.1 hypothetical protein -
  BVDSYZ_RS07760 (BVDSYZ_07760) - 1533791..1534078 (+) 288 Protein_1456 glutaminase -
  BVDSYZ_RS07765 (BVDSYZ_07765) - 1534694..1534996 (+) 303 WP_041481750.1 hypothetical protein -
  BVDSYZ_RS07770 (BVDSYZ_07770) - 1535146..1535388 (-) 243 WP_041481751.1 hypothetical protein -
  BVDSYZ_RS07775 (BVDSYZ_07775) - 1535498..1536160 (+) 663 WP_014417662.1 hypothetical protein -
  BVDSYZ_RS07785 (BVDSYZ_07785) - 1537236..1537649 (-) 414 WP_105322061.1 hypothetical protein -
  BVDSYZ_RS07790 (BVDSYZ_07790) - 1537849..1538193 (-) 345 WP_101293893.1 hypothetical protein -
  BVDSYZ_RS22070 - 1538224..1538379 (-) 156 WP_165913834.1 hypothetical protein -
  BVDSYZ_RS07795 (BVDSYZ_07795) - 1538369..1538734 (-) 366 WP_234015357.1 hypothetical protein -
  BVDSYZ_RS07800 (BVDSYZ_07800) - 1538882..1539283 (-) 402 WP_105322063.1 hypothetical protein -
  BVDSYZ_RS07805 (BVDSYZ_07805) - 1539463..1539681 (+) 219 WP_014417667.1 helix-turn-helix transcriptional regulator -
  BVDSYZ_RS07810 (BVDSYZ_07810) - 1539729..1540010 (+) 282 WP_014417668.1 hypothetical protein -
  BVDSYZ_RS07815 (BVDSYZ_07815) - 1540063..1540308 (-) 246 WP_105322064.1 helix-turn-helix domain-containing protein -
  BVDSYZ_RS07820 (BVDSYZ_07820) - 1540811..1541530 (+) 720 WP_105322065.1 hypothetical protein -
  BVDSYZ_RS07825 (BVDSYZ_07825) - 1541566..1541874 (-) 309 WP_234015358.1 hypothetical protein -
  BVDSYZ_RS07830 (BVDSYZ_07830) - 1541887..1543311 (-) 1425 WP_105322157.1 lipase -
  BVDSYZ_RS07835 (BVDSYZ_07835) - 1543361..1543726 (+) 366 WP_014417672.1 DUF1433 domain-containing protein -
  BVDSYZ_RS22075 - 1543769..1543942 (-) 174 WP_169061491.1 hypothetical protein -
  BVDSYZ_RS07840 (BVDSYZ_07840) rapC 1543932..1545068 (-) 1137 WP_105322066.1 RapH N-terminal domain-containing protein Regulator
  BVDSYZ_RS07850 (BVDSYZ_07850) - 1545393..1546337 (-) 945 WP_105322067.1 hypothetical protein -
  BVDSYZ_RS07855 (BVDSYZ_07855) - 1546590..1547324 (-) 735 WP_105322068.1 hypothetical protein -
  BVDSYZ_RS07860 (BVDSYZ_07860) - 1547415..1550036 (-) 2622 WP_113708627.1 phage tail protein -
  BVDSYZ_RS07865 (BVDSYZ_07865) - 1550049..1550807 (-) 759 WP_062623498.1 phage tail domain-containing protein -
  BVDSYZ_RS07870 (BVDSYZ_07870) - 1550865..1557755 (-) 6891 WP_105322069.1 phage tail tape measure protein -
  BVDSYZ_RS07875 (BVDSYZ_07875) - 1558500..1559633 (-) 1134 WP_105322070.1 GIY-YIG nuclease family protein -
  BVDSYZ_RS07880 (BVDSYZ_07880) - 1559808..1560686 (+) 879 WP_072589058.1 tyrosine-type recombinase/integrase -
  BVDSYZ_RS07885 (BVDSYZ_07885) - 1560813..1561022 (+) 210 WP_072589059.1 hypothetical protein -
  BVDSYZ_RS07890 (BVDSYZ_07890) - 1561067..1561360 (+) 294 WP_072589060.1 hypothetical protein -
  BVDSYZ_RS07895 (BVDSYZ_07895) - 1561459..1561668 (+) 210 WP_072589061.1 hypothetical protein -
  BVDSYZ_RS07900 (BVDSYZ_07900) - 1561665..1561961 (-) 297 WP_072589062.1 hypothetical protein -
  BVDSYZ_RS22080 - 1562011..1562178 (-) 168 WP_014417681.1 hypothetical protein -
  BVDSYZ_RS07905 (BVDSYZ_07905) - 1562452..1563117 (+) 666 WP_014471784.1 hypothetical protein -
  BVDSYZ_RS07910 (BVDSYZ_07910) - 1563129..1563617 (-) 489 WP_014471785.1 hypothetical protein -
  BVDSYZ_RS07915 (BVDSYZ_07915) - 1563614..1563775 (-) 162 WP_014471786.1 XkdX family protein -
  BVDSYZ_RS07920 (BVDSYZ_07920) - 1563776..1564159 (-) 384 WP_014471787.1 hypothetical protein -
  BVDSYZ_RS07925 (BVDSYZ_07925) - 1564156..1565475 (-) 1320 WP_014471788.1 hypothetical protein -
  BVDSYZ_RS07930 (BVDSYZ_07930) - 1565514..1566083 (-) 570 WP_014417686.1 HNH endonuclease -
  BVDSYZ_RS07935 (BVDSYZ_07935) - 1566094..1566288 (-) 195 WP_014471790.1 hypothetical protein -
  BVDSYZ_RS07940 (BVDSYZ_07940) - 1566436..1566645 (+) 210 WP_014471791.1 hypothetical protein -
  BVDSYZ_RS07945 (BVDSYZ_07945) - 1566905..1569751 (-) 2847 WP_234015359.1 hypothetical protein -
  BVDSYZ_RS07950 (BVDSYZ_07950) - 1569769..1571673 (-) 1905 WP_105322071.1 hypothetical protein -
  BVDSYZ_RS07955 (BVDSYZ_07955) - 1571988..1572950 (+) 963 WP_014417689.1 AimR family lysis-lysogeny pheromone receptor -
  BVDSYZ_RS21865 - 1572994..1573116 (+) 123 WP_134998052.1 lysogeny pheromone AimP family peptide -
  BVDSYZ_RS07960 (BVDSYZ_07960) - 1573593..1574474 (+) 882 WP_014417690.1 hypothetical protein -
  BVDSYZ_RS07965 (BVDSYZ_07965) - 1574492..1574992 (+) 501 WP_014417691.1 hypothetical protein -
  BVDSYZ_RS07970 (BVDSYZ_07970) - 1575020..1575865 (+) 846 WP_014417692.1 hypothetical protein -
  BVDSYZ_RS07975 (BVDSYZ_07975) - 1576072..1576434 (+) 363 WP_041481756.1 hypothetical protein -
  BVDSYZ_RS07980 (BVDSYZ_07980) - 1576458..1576718 (+) 261 WP_228370359.1 hypothetical protein -
  BVDSYZ_RS07985 (BVDSYZ_07985) - 1576987..1578696 (+) 1710 WP_014417694.1 recombinase family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44715.08 Da        Isoelectric Point: 4.8237

>NTDB_id=299707 BVDSYZ_RS07840 WP_105322066.1 1543932..1545068(-) (rapC) [Bacillus velezensis strain DSYZ]
MKQLISSSKVGVKINEWYKYIRMFSVPDAEVLKSEVEQEINAMEEDQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPEIS
DLLEKIESSQAKLKGILEYYFNFFRGMYEFEEYEYLKAISFYKQAEKKLSLVADEIERAEFHYKVAEIYYHMKQTHMSMH
HIVQAIESYRAHETYSVREIQCSFVIGLNYLDMEYPEKAIPHFQKAYKKALEIDMPRLAGSALYNLGISSFSEEKFDEAI
EYFKEGVLVYEQNGYEHANRLLDILFMLAKTNFKVNKKTEGTAVYNHGLSLAKNLNDEVLTKMFDFLNALYIDDNKEMLN
EILTYLEFKTMFSDVEDLATDAAKYYTKNEDHKAAGLFYEKVLYAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=299707 BVDSYZ_RS07840 WP_105322066.1 1543932..1545068(-) (rapC) [Bacillus velezensis strain DSYZ]
TTGAAACAGTTAATCTCCTCATCAAAAGTCGGCGTGAAGATTAATGAGTGGTACAAGTATATTCGTATGTTTAGTGTTCC
TGATGCAGAGGTGCTAAAATCAGAAGTTGAACAAGAAATAAACGCTATGGAAGAAGATCAAGATTTATTGTTGTACTATT
CCCTCATGTGTTTTAGGCATCAATTAATGCTTGATTACCTAGAACCAAAAACGATGAACGAAGAGCGCCCTGAGATTTCA
GACTTATTAGAAAAGATCGAAAGTAGCCAAGCTAAATTGAAAGGAATTCTTGAATATTATTTTAACTTTTTCCGTGGGAT
GTATGAATTTGAAGAATACGAATATCTTAAAGCGATAAGTTTTTACAAACAAGCGGAAAAGAAGTTGTCACTTGTAGCCG
ACGAAATTGAGCGAGCGGAGTTTCATTACAAAGTCGCTGAAATTTATTATCACATGAAACAAACACACATGTCGATGCAC
CATATTGTTCAAGCAATCGAAAGCTACAGAGCGCATGAAACCTATTCTGTTAGAGAAATTCAATGTTCTTTTGTTATTGG
TCTAAATTATTTAGACATGGAGTATCCAGAAAAGGCTATCCCTCATTTTCAAAAAGCTTATAAAAAAGCACTTGAAATTG
ATATGCCAAGATTAGCTGGATCCGCTCTTTATAATTTAGGGATCTCCTCGTTTTCTGAAGAAAAGTTCGACGAGGCTATT
GAGTATTTCAAAGAAGGAGTGTTGGTCTATGAGCAAAACGGATATGAACATGCTAACCGCTTATTAGACATTCTTTTCAT
GTTAGCGAAAACGAACTTTAAAGTAAATAAGAAAACTGAAGGAACAGCTGTTTATAATCATGGACTGTCATTGGCTAAAA
ACTTAAATGATGAAGTATTAACCAAAATGTTTGATTTCCTAAATGCCCTTTACATTGACGATAACAAAGAAATGCTAAAT
GAGATTCTTACTTATTTAGAATTTAAAACAATGTTTTCCGACGTGGAGGACTTAGCAACCGACGCAGCGAAGTATTATAC
AAAAAATGAAGACCATAAAGCAGCTGGATTATTTTATGAGAAAGTGCTTTATGCCCAAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_8)

(222-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

48.413

100

0.484
  rapF Bacillus subtilis subsp. subtilis str. 168

45.669

100

0.46

Multiple sequence alignment