Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ES969_RS19365 Genome accession   NZ_CP035402
Coordinates   3588122..3589255 (-) Length   377 a.a.
NCBI ID   WP_014481175.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103576     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3583122..3594255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES969_RS19325 (ES969_19325) ywnA 3583252..3583653 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  ES969_RS19330 (ES969_19330) ureC 3583788..3585497 (-) 1710 WP_014481168.1 urease subunit alpha -
  ES969_RS19335 (ES969_19335) ureB 3585494..3585868 (-) 375 WP_014481169.1 urease subunit beta -
  ES969_RS19340 (ES969_19340) ureA 3585865..3586182 (-) 318 WP_014478236.1 urease subunit gamma -
  ES969_RS21705 - 3586376..3586534 (-) 159 WP_158332665.1 hypothetical protein -
  ES969_RS22205 - 3586845..3587013 (-) 169 Protein_3731 urea ABC transporter substrate-binding protein -
  ES969_RS19355 (ES969_19355) csbD 3587226..3587414 (-) 189 WP_014481173.1 stress response protein CsbD -
  ES969_RS19360 (ES969_19360) - 3587487..3587966 (-) 480 WP_003244390.1 hypothetical protein -
  ES969_RS19365 (ES969_19365) rapC 3588122..3589255 (-) 1134 WP_014481175.1 response regulator aspartate phosphatase RapB Regulator
  ES969_RS19370 (ES969_19370) moaA 3589447..3590472 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  ES969_RS19375 (ES969_19375) fdhD 3590488..3591276 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  ES969_RS19380 (ES969_19380) - 3591509..3591670 (-) 162 WP_003227706.1 hypothetical protein -
  ES969_RS19385 (ES969_19385) ywmD 3591765..3592439 (-) 675 WP_014481179.1 VWA domain-containing protein -
  ES969_RS19390 (ES969_19390) - 3592492..3592632 (-) 141 WP_014481180.1 hypothetical protein -
  ES969_RS19395 (ES969_19395) ywmC 3592763..3593446 (-) 684 WP_041334706.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45041.13 Da        Isoelectric Point: 4.7537

>NTDB_id=299705 ES969_RS19365 WP_014481175.1 3588122..3589255(-) (rapC) [Bacillus subtilis strain SRCM103576]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALTVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHHEQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=299705 ES969_RS19365 WP_014481175.1 3588122..3589255(-) (rapC) [Bacillus subtilis strain SRCM103576]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTACTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCACGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.4

99.469

0.422

Multiple sequence alignment