Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ES969_RS02445 Genome accession   NZ_CP035402
Coordinates   474865..475299 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SRCM103576     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 469865..480299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES969_RS02415 (ES969_02415) ydaD 470512..471372 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  ES969_RS02420 (ES969_02420) lyxE 471388..471891 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  ES969_RS02425 (ES969_02425) ydaF 471979..472530 (+) 552 WP_014478866.1 GNAT family protein -
  ES969_RS02430 (ES969_02430) ydaG 472608..473030 (+) 423 WP_014478867.1 pyridoxamine 5'-phosphate oxidase family protein -
  ES969_RS02435 (ES969_02435) amj 473536..474345 (+) 810 WP_014478868.1 lipid II flippase Amj -
  ES969_RS02440 (ES969_02440) ydzA 474390..474680 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  ES969_RS02445 (ES969_02445) lrpC 474865..475299 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  ES969_RS02450 (ES969_02450) topB 475364..477547 (+) 2184 WP_014478870.1 DNA topoisomerase III -
  ES969_RS02455 (ES969_02455) mutT 477660..478112 (+) 453 WP_129133879.1 8-oxo-dGTP diphosphatase MutT -
  ES969_RS02460 (ES969_02460) poxB 478176..479900 (+) 1725 WP_046160070.1 pyruvate oxidase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=299589 ES969_RS02445 WP_003246585.1 474865..475299(+) (lrpC) [Bacillus subtilis strain SRCM103576]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=299589 ES969_RS02445 WP_003246585.1 474865..475299(+) (lrpC) [Bacillus subtilis strain SRCM103576]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment