Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   C2G35_RS06585 Genome accession   NZ_CP030137
Coordinates   1198048..1198494 (+) Length   148 a.a.
NCBI ID   WP_001790850.1    Uniprot ID   -
Organism   Staphylococcus aureus strain M51     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1193048..1203494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2G35_RS06550 (C2G35_06550) - 1193542..1193745 (+) 204 WP_000087561.1 YqgQ family protein -
  C2G35_RS06555 (C2G35_06555) - 1193742..1194728 (+) 987 WP_000161314.1 ROK family glucokinase -
  C2G35_RS06560 (C2G35_06560) - 1194728..1195057 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  C2G35_RS06565 (C2G35_06565) - 1195054..1195677 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  C2G35_RS06570 (C2G35_06570) comGA 1195729..1196703 (+) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  C2G35_RS06575 (C2G35_06575) comGB 1196675..1197745 (+) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  C2G35_RS06580 (C2G35_06580) comGC 1197759..1198070 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  C2G35_RS06585 (C2G35_06585) comGD 1198048..1198494 (+) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  C2G35_RS06590 (C2G35_06590) comGE 1198481..1198780 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  C2G35_RS06595 (C2G35_06595) comGF 1198698..1199195 (+) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  C2G35_RS06600 (C2G35_06600) - 1199292..1199438 (+) 147 WP_001789879.1 hypothetical protein -
  C2G35_RS06605 (C2G35_06605) - 1199428..1199952 (+) 525 WP_001015117.1 shikimate kinase -
  C2G35_RS06610 (C2G35_06610) gcvT 1200111..1201202 (+) 1092 WP_053872994.1 glycine cleavage system aminomethyltransferase GcvT -
  C2G35_RS06615 (C2G35_06615) gcvPA 1201222..1202568 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17213.42 Da        Isoelectric Point: 10.3682

>NTDB_id=299582 C2G35_RS06585 WP_001790850.1 1198048..1198494(+) (comGD) [Staphylococcus aureus strain M51]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=299582 C2G35_RS06585 WP_001790850.1 1198048..1198494(+) (comGD) [Staphylococcus aureus strain M51]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment