Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   ES969_RS00340 Genome accession   NZ_CP035402
Coordinates   61024..61254 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain SRCM103576     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 56024..66254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES969_RS00310 (ES969_00310) ridA 56188..56565 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  ES969_RS00315 (ES969_00315) spoVG 56760..57053 (+) 294 WP_003218346.1 septation regulator SpoVG -
  ES969_RS00320 (ES969_00320) glmU 57246..58616 (+) 1371 WP_069963937.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  ES969_RS00325 (ES969_00325) prsS 58639..59592 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  ES969_RS00330 (ES969_00330) rplYB 59677..60291 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  ES969_RS00335 (ES969_00335) pth 60398..60964 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  ES969_RS00340 (ES969_00340) subA/fin 61024..61254 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  ES969_RS00345 (ES969_00345) mfd 61324..64857 (+) 3534 WP_129133843.1 transcription-repair coupling factor -
  ES969_RS00350 (ES969_00350) spoVT 64993..65529 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=299573 ES969_RS00340 WP_003243417.1 61024..61254(+) (subA/fin) [Bacillus subtilis strain SRCM103576]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=299573 ES969_RS00340 WP_003243417.1 61024..61254(+) (subA/fin) [Bacillus subtilis strain SRCM103576]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1