Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DP112_RS08980 Genome accession   NZ_CP030125
Coordinates   1800721..1801455 (-) Length   244 a.a.
NCBI ID   WP_024406554.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1795721..1806455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS08950 (DP112_08950) - 1795909..1796205 (-) 297 WP_002942375.1 YlxR family protein -
  DP112_RS08955 (DP112_08955) nusA 1796222..1797364 (-) 1143 WP_014638606.1 transcription termination factor NusA -
  DP112_RS08960 (DP112_08960) rimP 1797437..1797907 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  DP112_RS08965 (DP112_08965) trmB 1798205..1798843 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DP112_RS08970 (DP112_08970) - 1798840..1799634 (-) 795 WP_002942360.1 phosphotransferase family protein -
  DP112_RS08975 (DP112_08975) - 1799684..1800724 (-) 1041 WP_044684175.1 ABC transporter permease -
  DP112_RS08980 (DP112_08980) pptA 1800721..1801455 (-) 735 WP_024406554.1 ABC transporter ATP-binding protein Regulator
  DP112_RS08985 (DP112_08985) - 1801518..1801931 (+) 414 WP_024411979.1 HIT family protein -
  DP112_RS08990 (DP112_08990) - 1801933..1802235 (+) 303 WP_014638609.1 hypothetical protein -
  DP112_RS08995 (DP112_08995) - 1802640..1803833 (-) 1194 WP_114866808.1 LCP family protein -
  DP112_RS09000 (DP112_09000) - 1803830..1804357 (-) 528 WP_114866809.1 GNAT family N-acetyltransferase -
  DP112_RS09005 (DP112_09005) tsaE 1804350..1804790 (-) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26862.13 Da        Isoelectric Point: 4.3606

>NTDB_id=299500 DP112_RS08980 WP_024406554.1 1800721..1801455(-) (pptA) [Streptococcus suis strain HA1003]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLITLLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=299500 DP112_RS08980 WP_024406554.1 1800721..1801455(-) (pptA) [Streptococcus suis strain HA1003]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCGGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACACCTT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTCGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAAAAATTGGACTGGTTTCCTGTCAACTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGCTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGACTTGATTACTCTTTTGGAGGAAGAAAAATCTAAGGGTACTTCCATTCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTCCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAACGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721

Multiple sequence alignment