Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   DP112_RS08215 Genome accession   NZ_CP030125
Coordinates   1646109..1647884 (-) Length   591 a.a.
NCBI ID   WP_164503925.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1641109..1652884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS08185 (DP112_08185) - 1641223..1641645 (+) 423 WP_105179921.1 hypothetical protein -
  DP112_RS08190 (DP112_08190) - 1641635..1643434 (+) 1800 WP_114866744.1 acyltransferase family protein -
  DP112_RS08195 (DP112_08195) - 1643627..1644280 (-) 654 WP_114866745.1 phosphatase PAP2 family protein -
  DP112_RS08200 (DP112_08200) - 1644305..1644862 (-) 558 WP_024384582.1 ECF transporter S component -
  DP112_RS08205 (DP112_08205) - 1645187..1645732 (-) 546 WP_029186163.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  DP112_RS08215 (DP112_08215) oppA 1646109..1647884 (-) 1776 WP_164503925.1 oligopeptide ABC transporter substrate-binding protein Regulator
  DP112_RS08220 (DP112_08220) yidD 1648533..1648772 (-) 240 WP_114866747.1 membrane protein insertion efficiency factor YidD -
  DP112_RS08225 (DP112_08225) - 1648772..1649503 (-) 732 WP_012027615.1 pseudouridine synthase -
  DP112_RS08230 (DP112_08230) scpB 1649493..1650062 (-) 570 WP_002939233.1 SMC-Scp complex subunit ScpB -
  DP112_RS08235 (DP112_08235) - 1650046..1650765 (-) 720 WP_114866748.1 segregation/condensation protein A -
  DP112_RS08240 (DP112_08240) xerD 1650765..1651496 (-) 732 WP_114866749.1 site-specific tyrosine recombinase XerD -
  DP112_RS08245 (DP112_08245) cbpB 1651493..1651951 (-) 459 WP_024380305.1 cyclic-di-AMP-binding protein CbpB -
  DP112_RS08250 (DP112_08250) - 1651948..1652475 (-) 528 WP_114866750.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 65442.12 Da        Isoelectric Point: 4.2481

>NTDB_id=299497 DP112_RS08215 WP_164503925.1 1646109..1647884(-) (oppA) [Streptococcus suis strain HA1003]
MKRMKNIALTGIGLLSIAALTACQTKEKTSDVALTFNSEVTNEGQTIEGGSLKYALVASAPSTGILIDELSQTAVDSTFA
DMVDISMFGYDSARKLDDSGLAKAEFDVEAKTVTVSLTGKDYKWSDGQAFTIDDYIFTIEQLASPDYTGVRADTTYTNIV
GFEEFQAGTASEISGVKKVDDYTVVLSVKDMSPSMMYAGGGVPYLVMPKHIFKDIAVKDWESSEYSRTAKVVGMGPYKVK
EIVNGESVTYVPNEYYFKGKVKLDSYRIDIVSPDTIVAEMRAGNYDIADMPTDQYESYKDLSNITLLGSLDGIYNYIGFN
LGKYDETSGKNVTNPNAKMNNVKLRQAMGYALDNAVIGEKLYNGLYHPTNSLIISFFGDVHDSELAGYSYDPEKAKKLLD
EAGYKDVDGDGMREDADGKPLTISVAAQKSTETQETMVQQYLTWWKEIGLNVELYTGRTIEYNTFYESIAANDEGIDVYL
AAWIAGLDPDPTSLWGPEAMYNYTRFVSDENTALLNKITSAESFDEQKNIENYKAWQEYAFEQAFAIPTFERESITAVNK
RVKYYDVYIGSDSKSGHENLELTAEKGIAAE

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=299497 DP112_RS08215 WP_164503925.1 1646109..1647884(-) (oppA) [Streptococcus suis strain HA1003]
ATGAAAAGAATGAAAAACATCGCTTTAACTGGTATCGGTCTGCTTTCTATTGCAGCGTTAACAGCTTGTCAAACTAAAGA
AAAGACGAGCGATGTTGCTCTGACATTTAACTCAGAAGTGACAAACGAAGGACAAACTATTGAAGGCGGGAGTCTCAAAT
ATGCCTTGGTAGCTTCGGCGCCTTCGACCGGTATCTTAATTGATGAATTATCGCAAACGGCGGTAGACTCAACCTTTGCA
GACATGGTTGATATTTCTATGTTTGGATATGATTCAGCTCGTAAGTTAGACGATTCAGGCCTTGCTAAGGCAGAGTTTGA
TGTAGAGGCAAAGACAGTTACCGTTAGTTTGACAGGCAAGGACTATAAGTGGTCCGATGGGCAAGCCTTCACCATCGATG
ATTATATTTTCACAATCGAACAACTAGCTAGTCCAGACTATACAGGAGTTCGTGCAGACACTACTTACACAAATATCGTT
GGTTTCGAAGAATTTCAGGCTGGAACAGCAAGTGAAATTTCAGGTGTTAAGAAGGTTGATGACTATACGGTAGTTCTCTC
AGTGAAAGACATGTCTCCATCCATGATGTATGCTGGTGGGGGAGTACCTTATTTAGTCATGCCGAAACACATTTTTAAAG
ACATTGCAGTCAAAGATTGGGAATCAAGTGAGTATTCTCGTACGGCAAAAGTTGTCGGTATGGGCCCTTATAAGGTCAAG
GAAATTGTCAATGGCGAGTCGGTGACCTATGTACCAAATGAGTACTACTTTAAAGGGAAAGTTAAGCTAGATAGTTACAG
GATTGATATTGTTTCACCAGATACGATTGTTGCAGAAATGAGAGCAGGCAATTATGATATTGCTGATATGCCAACAGACC
AGTACGAATCTTATAAGGACTTATCAAATATTACTTTGCTAGGTAGTCTGGATGGTATTTACAATTATATTGGCTTCAAT
CTTGGTAAGTACGATGAGACCAGCGGTAAAAATGTGACCAATCCTAATGCTAAGATGAATAATGTTAAATTGCGTCAAGC
AATGGGATATGCGTTGGACAATGCGGTGATTGGAGAGAAATTATATAACGGCTTGTATCACCCGACAAACTCACTAATTA
TCTCTTTCTTTGGAGATGTTCACGATTCAGAACTAGCTGGCTATAGTTATGATCCTGAAAAGGCTAAAAAACTTCTCGAT
GAGGCAGGATATAAAGACGTTGATGGAGACGGTATGCGTGAAGATGCTGATGGAAAACCACTTACCATCAGTGTTGCAGC
ACAGAAATCAACCGAAACGCAAGAAACCATGGTACAACAATACCTTACATGGTGGAAAGAAATTGGTTTGAATGTGGAAC
TCTATACAGGAAGAACCATTGAGTACAATACTTTCTATGAATCAATTGCTGCCAATGATGAGGGGATTGATGTCTATCTT
GCTGCTTGGATTGCCGGTCTAGATCCAGACCCAACATCATTGTGGGGACCTGAAGCTATGTACAACTATACTCGCTTCGT
TTCAGATGAAAACACAGCACTTTTAAATAAAATTACCTCTGCTGAGTCATTTGACGAACAGAAAAATATTGAAAACTACA
AAGCTTGGCAAGAATATGCATTCGAACAAGCCTTTGCAATTCCAACCTTTGAACGTGAAAGTATTACTGCCGTTAACAAA
CGTGTTAAATATTACGACGTTTATATCGGTTCGGACAGTAAATCAGGCCATGAAAATCTTGAGTTGACTGCGGAAAAAGG
GATTGCAGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(101-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

65.657

100

0.66

Multiple sequence alignment