Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ETA18_RS19250 Genome accession   NZ_CP035400
Coordinates   3679516..3680649 (-) Length   377 a.a.
NCBI ID   WP_088327159.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103835     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3674516..3685649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA18_RS19210 (ETA18_19210) ywnA 3674656..3675057 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  ETA18_RS19215 (ETA18_19215) ureC 3675192..3676901 (-) 1710 WP_038429770.1 urease subunit alpha -
  ETA18_RS19220 (ETA18_19220) ureB 3676898..3677272 (-) 375 WP_088327157.1 urease subunit beta -
  ETA18_RS19225 (ETA18_19225) ureA 3677269..3677586 (-) 318 WP_003227724.1 urease subunit gamma -
  ETA18_RS19230 (ETA18_19230) - 3677744..3677938 (-) 195 WP_119899878.1 hypothetical protein -
  ETA18_RS22020 - 3678240..3678408 (-) 169 Protein_3709 urea ABC transporter substrate-binding protein -
  ETA18_RS19240 (ETA18_19240) csbD 3678622..3678810 (-) 189 WP_003227718.1 stress response protein CsbD -
  ETA18_RS19245 (ETA18_19245) - 3678883..3679362 (-) 480 WP_003244390.1 hypothetical protein -
  ETA18_RS19250 (ETA18_19250) rapC 3679516..3680649 (-) 1134 WP_088327159.1 response regulator aspartate phosphatase RapB Regulator
  ETA18_RS19255 (ETA18_19255) moaA 3680841..3681866 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  ETA18_RS19260 (ETA18_19260) fdhD 3681882..3682670 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  ETA18_RS19265 (ETA18_19265) - 3682903..3683064 (-) 162 WP_003227706.1 hypothetical protein -
  ETA18_RS19270 (ETA18_19270) ywmD 3683159..3683833 (-) 675 WP_003243553.1 VWA domain-containing protein -
  ETA18_RS19275 (ETA18_19275) - 3683886..3684026 (-) 141 WP_014478246.1 hypothetical protein -
  ETA18_RS19280 (ETA18_19280) ywmC 3684157..3684840 (-) 684 WP_014478248.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45124.25 Da        Isoelectric Point: 4.7156

>NTDB_id=299403 ETA18_RS19250 WP_088327159.1 3679516..3680649(-) (rapC) [Bacillus subtilis strain SRCM103835]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEETQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKEELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=299403 ETA18_RS19250 WP_088327159.1 3679516..3680649(-) (rapC) [Bacillus subtilis strain SRCM103835]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAAACTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTAATCGGATCAGCCCTTTATAATATTGGGAATTGCTATGATGACAAGGAGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAAGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(153-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424

Multiple sequence alignment