Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ETA18_RS13090 Genome accession   NZ_CP035400
Coordinates   2524528..2525661 (-) Length   377 a.a.
NCBI ID   WP_128993177.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103835     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2519528..2530661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA18_RS13065 (ETA18_13065) - 2520781..2521014 (+) 234 Protein_2511 helix-turn-helix domain-containing protein -
  ETA18_RS13070 (ETA18_13070) arsC 2521225..2521644 (-) 420 WP_029318100.1 arsenate reductase (thioredoxin) -
  ETA18_RS13075 (ETA18_13075) acr3 2521656..2522696 (-) 1041 WP_032722149.1 arsenite efflux transporter Acr3 -
  ETA18_RS13080 (ETA18_13080) arsK 2522719..2523159 (-) 441 WP_128993176.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  ETA18_RS13085 (ETA18_13085) arsR 2523220..2523537 (-) 318 WP_004399122.1 arsenical resistance operon transcriptional regulator ArsR -
  ETA18_RS21680 - 2524380..2524538 (-) 159 WP_162830452.1 hypothetical protein -
  ETA18_RS13090 (ETA18_13090) rapC 2524528..2525661 (-) 1134 WP_128993177.1 tetratricopeptide repeat protein Regulator
  ETA18_RS13095 (ETA18_13095) - 2526071..2526223 (+) 153 WP_128993178.1 hypothetical protein -
  ETA18_RS13100 (ETA18_13100) yqcG 2526429..2528024 (+) 1596 WP_128993179.1 LXG family T7SS effector endonuclease toxin YqcG -
  ETA18_RS13105 (ETA18_13105) yqcF 2528039..2528617 (+) 579 WP_095317829.1 type VII secretion system immunity protein YqcF -
  ETA18_RS13110 (ETA18_13110) - 2528729..2529049 (+) 321 WP_106293632.1 contact-dependent growth inhibition system immunity protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 44530.87 Da        Isoelectric Point: 5.4607

>NTDB_id=299367 ETA18_RS13090 WP_128993177.1 2524528..2525661(-) (rapC) [Bacillus subtilis strain SRCM103835]
MNPVLPSSHVGVKITEWYKMIRQFSVPDAEILKAEVEREIKQMEEDEYLLIYYSLMSFRHQLMLDYLEPEKKYRTARPTI
SELLEKIEAPQKKLTGLLKYYSLFFRGMYEFDQQEFVEAINYYRKAEKELYAVTDEIEQAEFHFKVAEAYYNMKQTHVSM
HHILKALEIYDQNPLYTVRKIQSLFVIVGNYLDFKHYEKGLKHLEEALKLSKELGHDRLISSALYNLGECYHYMGQPSKA
EGYLKEAAEVAEKANLRTLPHTLHSLATVLFKQEKFNDGQKVLHQGIETAQKFNDELFLSMNKFLNALYIESVDKQGILN
ILNDLNESHMFSFTEHITLLTAEYYREGGEFEESSFFYDKMVEAQLQIQRGDCLYEY

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=299367 ETA18_RS13090 WP_128993177.1 2524528..2525661(-) (rapC) [Bacillus subtilis strain SRCM103835]
GTGAATCCGGTTTTACCTTCCTCACATGTAGGGGTTAAGATTACCGAATGGTATAAGATGATACGTCAGTTTAGTGTTCC
GGATGCTGAAATTTTAAAAGCAGAAGTTGAAAGAGAAATCAAACAGATGGAAGAGGATGAGTACTTACTAATTTATTACT
CCCTCATGAGCTTTCGACACCAACTTATGCTCGACTACTTAGAGCCAGAAAAAAAGTATAGAACAGCACGTCCAACCATC
TCAGAATTACTTGAAAAAATTGAAGCTCCCCAAAAGAAATTAACCGGTCTCCTGAAATATTACTCATTATTTTTCCGTGG
TATGTATGAATTCGATCAGCAAGAATTCGTCGAAGCTATTAATTATTACCGTAAAGCTGAAAAAGAACTTTATGCTGTTA
CTGATGAAATCGAACAAGCTGAATTTCATTTTAAAGTAGCAGAAGCTTATTACAACATGAAACAAACTCACGTTTCCATG
CACCACATTTTAAAGGCATTGGAGATTTATGATCAGAATCCACTGTATACTGTAAGGAAAATTCAAAGCTTGTTTGTAAT
CGTTGGTAACTATCTTGATTTTAAACATTATGAAAAAGGATTGAAACATCTTGAAGAAGCTCTGAAACTTTCTAAAGAAT
TGGGCCACGACAGACTAATAAGTTCGGCTCTTTATAATTTAGGCGAATGTTATCATTACATGGGACAACCAAGTAAAGCT
GAGGGATATTTGAAAGAAGCAGCTGAAGTTGCAGAAAAAGCAAATTTAAGGACACTTCCTCATACGCTTCATTCGTTGGC
CACAGTTTTATTCAAGCAAGAAAAGTTTAATGACGGACAGAAGGTTTTGCATCAAGGGATCGAAACAGCACAAAAATTTA
ATGACGAACTTTTCTTATCGATGAATAAGTTTCTGAATGCTTTATATATTGAGTCAGTTGATAAACAGGGTATCCTTAAT
ATATTGAATGATCTTAATGAAAGTCACATGTTCTCTTTTACGGAACACATAACGTTGCTTACTGCAGAATATTATAGAGA
AGGCGGAGAATTTGAAGAATCCAGTTTTTTCTACGATAAAATGGTTGAAGCGCAGCTTCAAATTCAGCGAGGTGACTGTT
TATATGAGTATTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(197-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

43.467

99.469

0.432
  rapF Bacillus subtilis subsp. subtilis str. 168

40.212

100

0.403