Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB432_RS01255 Genome accession   NZ_CP030117
Coordinates   210634..212001 (+) Length   455 a.a.
NCBI ID   WP_048035639.1    Uniprot ID   A0A2Z4MBC1
Organism   Brevibacillus brevis strain DZQ7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 205634..217001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB432_RS01235 (AB432_001235) - 205918..206382 (+) 465 WP_048035636.1 CtsR family transcriptional regulator -
  AB432_RS01240 (AB432_001240) - 206399..206917 (+) 519 WP_048035637.1 UvrB/UvrC motif-containing protein -
  AB432_RS01245 (AB432_001245) - 206937..208010 (+) 1074 WP_048035638.1 protein arginine kinase -
  AB432_RS01250 (AB432_001250) - 208077..210527 (+) 2451 WP_016742864.1 ATP-dependent Clp protease ATP-binding subunit -
  AB432_RS01255 (AB432_001255) radA 210634..212001 (+) 1368 WP_048035639.1 DNA repair protein RadA Machinery gene
  AB432_RS01260 (AB432_001260) disA 212010..213086 (+) 1077 WP_048036021.1 DNA integrity scanning diadenylate cyclase DisA -
  AB432_RS01265 (AB432_001265) pssA 213201..213929 (+) 729 WP_017247027.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  AB432_RS01270 (AB432_001270) - 214025..214420 (-) 396 WP_007716195.1 hypothetical protein -
  AB432_RS01275 (AB432_001275) - 214707..215795 (+) 1089 WP_048035640.1 PIN/TRAM domain-containing protein -
  AB432_RS01280 (AB432_001280) ispD 215820..216506 (+) 687 WP_048035641.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  AB432_RS01285 (AB432_001285) ispF 216510..216983 (+) 474 WP_048035642.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49414.78 Da        Isoelectric Point: 6.8250

>NTDB_id=299363 AB432_RS01255 WP_048035639.1 210634..212001(+) (radA) [Brevibacillus brevis strain DZQ7]
MSKYKTKYACQECGYESPKWMGKCPGCSSWNTLVEEVTVKTAHRHEGLSGGQRQSAIPLTQVASEEEPRMDTTIGELNRV
LGGGLVPGSLILVGGDPGIGKSTLLLQTSFALAHQGAKVLYVSGEESAKQIKIRADRLHLQTPPMFVLAENDLDLIEQHI
NQVDPDVLIIDSIQTVFHPTIQSAAGSVAQVREATAQLMRIAKGKGIGTFIVGHVTKEGSIAGPRMLEHMVDAVLYFEGE
RHNTFRILRAVKNRFGSTNEIGIFEMKDRGLEEVANPSEIFLAERPFGVAGSTVVASMEGTRPVLVELQALVAPTSFVTP
RRTATGVDHQRVAMIMAVLEKRMGMMLQNQDAYVNVAGGVRLDEPAVDLAIAVSIASSFRDHATNPHDVVIGEIGLTGEV
RGVSRIEQRVREAHKLGFKRVIIPEKNIRGLDAPADIQVIGVSNIADALNEVIRR

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=299363 AB432_RS01255 WP_048035639.1 210634..212001(+) (radA) [Brevibacillus brevis strain DZQ7]
ATGTCAAAGTATAAAACGAAATACGCGTGTCAAGAATGTGGCTATGAATCGCCAAAATGGATGGGAAAATGCCCGGGATG
CAGCAGTTGGAACACTTTGGTGGAGGAAGTGACGGTTAAAACGGCACATCGCCACGAAGGGCTCAGCGGCGGCCAGCGCC
AATCTGCGATTCCATTGACCCAGGTAGCCAGTGAAGAAGAGCCACGCATGGATACGACGATCGGAGAATTGAATCGTGTT
CTTGGTGGAGGACTTGTTCCGGGTTCACTCATTTTGGTGGGGGGAGATCCGGGAATCGGGAAATCGACATTGCTTTTGCA
GACATCATTTGCCTTGGCTCATCAAGGGGCGAAGGTTCTCTATGTATCTGGAGAGGAGTCGGCAAAGCAAATTAAAATTC
GCGCAGATCGACTCCATTTGCAAACGCCGCCGATGTTTGTATTGGCAGAAAATGATTTGGATTTGATCGAACAGCATATT
AATCAAGTAGACCCGGATGTGCTGATTATTGACTCGATCCAGACCGTGTTTCACCCGACCATCCAATCGGCTGCGGGGAG
TGTCGCACAAGTGCGGGAGGCTACTGCCCAATTGATGCGGATTGCAAAAGGGAAAGGAATTGGTACCTTCATCGTCGGTC
ACGTTACCAAGGAAGGCTCCATCGCCGGTCCGCGTATGCTTGAGCACATGGTGGATGCTGTTCTTTATTTTGAAGGGGAG
CGCCACAATACATTTCGAATTTTGCGCGCCGTCAAAAACCGCTTTGGTTCGACAAACGAAATCGGGATTTTCGAGATGAA
GGATCGCGGTTTGGAGGAAGTGGCGAATCCATCTGAGATATTTTTGGCAGAGCGTCCATTTGGTGTTGCGGGCTCCACGG
TCGTAGCCAGTATGGAGGGCACGCGTCCCGTTTTGGTTGAGCTGCAAGCTCTCGTTGCCCCGACCAGCTTTGTAACGCCA
CGGAGAACGGCAACAGGGGTCGATCATCAGCGTGTGGCGATGATCATGGCAGTGTTGGAAAAGCGCATGGGCATGATGCT
GCAAAATCAGGATGCTTATGTAAACGTAGCAGGCGGGGTCAGATTGGATGAGCCAGCCGTTGATTTGGCGATTGCCGTAA
GCATTGCAAGCAGTTTCCGTGACCACGCTACCAATCCGCATGATGTCGTTATCGGCGAAATTGGCCTGACTGGTGAGGTG
CGCGGTGTCTCCCGTATTGAGCAGCGAGTACGAGAAGCACATAAATTAGGCTTTAAGCGTGTCATCATCCCTGAGAAAAA
CATCCGCGGTCTGGATGCGCCAGCAGATATTCAAGTGATTGGTGTGAGCAATATTGCCGATGCGTTGAACGAGGTGATAA
GGAGGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-219)

Subunit ChlI of Mg-chelatase (ChlI)

(329-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4MBC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.929

99.341

0.655
  radA Streptococcus pneumoniae Rx1

58.057

99.56

0.578
  radA Streptococcus pneumoniae D39

58.057

99.56

0.578
  radA Streptococcus pneumoniae R6

58.057

99.56

0.578
  radA Streptococcus pneumoniae TIGR4

58.057

99.56

0.578
  radA Streptococcus mitis NCTC 12261

58.057

99.56

0.578
  radA Streptococcus mitis SK321

58.057

99.56

0.578

Multiple sequence alignment