Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   ETA18_RS11595 Genome accession   NZ_CP035400
Coordinates   2267628..2269118 (-) Length   496 a.a.
NCBI ID   WP_015251799.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103835     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2262628..2274118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA18_RS11565 (ETA18_11565) gudB 2262768..2264042 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  ETA18_RS11570 (ETA18_11570) mecB 2264198..2264782 (-) 585 WP_003230533.1 genetic competence negative regulator -
  ETA18_RS11575 (ETA18_11575) ypbG 2264941..2265720 (-) 780 WP_003230532.1 metallophosphoesterase -
  ETA18_RS11580 (ETA18_11580) ypbF 2265805..2266248 (-) 444 WP_003230531.1 YpbF family protein -
  ETA18_RS11585 (ETA18_11585) claE 2266311..2267048 (-) 738 WP_128993074.1 LysM peptidoglycan-binding domain-containing protein -
  ETA18_RS11590 (ETA18_11590) ypbD 2266999..2267601 (-) 603 WP_206734034.1 CPBP family intramembrane glutamic endopeptidase -
  ETA18_RS11595 (ETA18_11595) recS 2267628..2269118 (-) 1491 WP_015251799.1 ATP-dependent DNA helicase RecQ Machinery gene
  ETA18_RS11600 (ETA18_11600) gmmB 2269111..2270169 (-) 1059 WP_017695905.1 helix-turn-helix domain-containing protein -
  ETA18_RS11605 (ETA18_11605) fdxA 2270435..2270683 (+) 249 WP_003225461.1 ferredoxin -
  ETA18_RS11610 (ETA18_11610) fmnP 2270721..2271293 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  ETA18_RS11615 (ETA18_11615) serA 2271789..2273366 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56509.05 Da        Isoelectric Point: 6.4518

>NTDB_id=299348 ETA18_RS11595 WP_015251799.1 2267628..2269118(-) (recS) [Bacillus subtilis strain SRCM103835]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=299348 ETA18_RS11595 WP_015251799.1 2267628..2269118(-) (recS) [Bacillus subtilis strain SRCM103835]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAACTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTGAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGACACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCAACACGGAAATGG
GCTGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCTGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGTGATGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.798

100

0.998