Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   ETA18_RS10540 Genome accession   NZ_CP035400
Coordinates   2089139..2090914 (-) Length   591 a.a.
NCBI ID   WP_114523477.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103835     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2084139..2095914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA18_RS10520 (ETA18_10520) desE 2084512..2085570 (+) 1059 WP_029318044.1 fatty acid desaturase DesE -
  ETA18_RS10525 (ETA18_10525) desK 2085690..2086802 (+) 1113 WP_029318043.1 two-component sensor histidine kinase DesK -
  ETA18_RS10530 (ETA18_10530) desR 2086821..2087420 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  ETA18_RS10535 (ETA18_10535) walN 2088028..2088891 (-) 864 WP_003231267.1 3D domain-containing protein -
  ETA18_RS10540 (ETA18_10540) recQ 2089139..2090914 (-) 1776 WP_114523477.1 DNA helicase RecQ Machinery gene
  ETA18_RS10550 (ETA18_10550) azoJ 2091474..2092100 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  ETA18_RS10555 (ETA18_10555) stpP 2092252..2092743 (-) 492 WP_003231259.1 TraR/DksA family transcriptional regulator -
  ETA18_RS10560 (ETA18_10560) - 2092818..2093150 (-) 333 WP_003231257.1 hypothetical protein -
  ETA18_RS10565 (ETA18_10565) - 2093228..2093455 (+) 228 WP_015383862.1 hypothetical protein -
  ETA18_RS10570 (ETA18_10570) yocM 2093442..2093918 (-) 477 WP_122895479.1 salt stress-responsive protein YocM -
  ETA18_RS10575 (ETA18_10575) - 2093985..2094248 (+) 264 WP_004399338.1 hypothetical protein -
  ETA18_RS10580 (ETA18_10580) - 2094253..2094486 (+) 234 WP_003231251.1 hypothetical protein -
  ETA18_RS10585 (ETA18_10585) yozO 2094573..2094917 (-) 345 WP_003220141.1 PH domain-containing protein -
  ETA18_RS10590 (ETA18_10590) yozC 2095274..2095477 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67398.87 Da        Isoelectric Point: 6.1778

>NTDB_id=299345 ETA18_RS10540 WP_114523477.1 2089139..2090914(-) (recQ) [Bacillus subtilis strain SRCM103835]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGMADDERKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVPSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=299345 ETA18_RS10540 WP_114523477.1 2089139..2090914(-) (recQ) [Bacillus subtilis strain SRCM103835]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATATCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTTATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACAGGATTTTCACGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAAGTCAGGGCAGGCCGGTATCATGGAGGTATGGCTGATGA
TGAGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATCAGATTTGTTCTGCATGCACAAATCCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGTTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCACAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCCGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGTGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTACCCAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGAATGACAGACTAA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

DEAD/DEAH box helicase (DEAD)

(21-182)

HRDC domain (HRDC)

(518-583)

RQC domain (RQC)

(403-507)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.323

100

0.993