Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DPR13_RS12625 Genome accession   NZ_CP030110
Coordinates   2515525..2516895 (-) Length   456 a.a.
NCBI ID   WP_002310456.1    Uniprot ID   -
Organism   Enterococcus faecium strain BM4105-RF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2510525..2521895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPR13_RS12610 (DPR13_12610) epsC 2511848..2512384 (-) 537 WP_002293094.1 serine O-acetyltransferase EpsC -
  DPR13_RS12615 (DPR13_12615) gltX 2512704..2514164 (-) 1461 WP_002293095.1 glutamate--tRNA ligase -
  DPR13_RS12620 (DPR13_12620) - 2514334..2515491 (-) 1158 WP_002287448.1 PIN/TRAM domain-containing protein -
  DPR13_RS12625 (DPR13_12625) radA 2515525..2516895 (-) 1371 WP_002310456.1 DNA repair protein RadA Machinery gene
  DPR13_RS12630 (DPR13_12630) - 2516958..2517485 (-) 528 WP_002314319.1 dUTP diphosphatase -
  DPR13_RS12635 (DPR13_12635) proB 2517716..2518522 (+) 807 WP_002314318.1 glutamate 5-kinase -
  DPR13_RS12640 (DPR13_12640) - 2518519..2519766 (+) 1248 WP_002310461.1 glutamate-5-semialdehyde dehydrogenase -
  DPR13_RS12645 (DPR13_12645) - 2519842..2520186 (+) 345 WP_002310463.1 hypothetical protein -
  DPR13_RS12650 (DPR13_12650) - 2520303..2520629 (-) 327 WP_002310464.1 hypothetical protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49916.56 Da        Isoelectric Point: 7.4545

>NTDB_id=299333 DPR13_RS12625 WP_002310456.1 2515525..2516895(-) (radA) [Enterococcus faecium strain BM4105-RF]
MAKKSKVQFVCQNCGYVSPKFLGRCPNCGKWNTMVEEIEQDTTDRRTRTSLTGEKAKPTKIADVVPKKEPRVKTKLEELN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSQQLAAIGGKVLYVSGEESAEQIKLRAERLGSINTEFYLYAETDMNEISR
AIEHISPDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEERLDGATGSAIVVAMEGTRPILVEIQALVTPTMFG
NAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTQPTECFIGEIGLTG
EIRRVSHIEQRVKEVQKLGFTKVYLPKNNLGNWEAPKGIEIVGVATLAETLKRVFH

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=299333 DPR13_RS12625 WP_002310456.1 2515525..2516895(-) (radA) [Enterococcus faecium strain BM4105-RF]
ATGGCAAAAAAATCAAAAGTACAATTTGTTTGCCAAAATTGCGGGTATGTGTCGCCTAAGTTCTTGGGACGCTGCCCAAA
TTGCGGAAAATGGAACACGATGGTCGAAGAAATCGAACAAGATACAACAGACCGCAGAACGCGGACAAGTTTGACAGGAG
AAAAAGCGAAACCAACAAAAATCGCAGACGTCGTCCCTAAAAAAGAACCTCGGGTCAAAACGAAATTAGAAGAACTGAAC
CGTGTGCTAGGTGGAGGCGTGGTTCCGGGATCCATGGTCTTGATTGGTGGAGATCCAGGTATTGGTAAATCCACTTTGCT
GTTACAAGTTTCTCAACAATTAGCAGCCATAGGCGGGAAAGTCTTGTATGTATCCGGCGAAGAAAGCGCAGAACAGATAA
AATTACGCGCGGAGCGCCTCGGAAGTATCAACACAGAATTTTATCTATACGCTGAAACAGATATGAATGAAATCAGTCGT
GCCATCGAACATATCTCCCCTGATTATGTTATTATTGATTCCATCCAAACGATGACGCAGCCAGACATCACAAGTGTGGC
AGGAAGCGTCAGCCAAGTAAGAGAAACCACTGCAGAATTACTCAAAATCGCTAAAACGAATGGAATTGCCATTTTTATCG
TCGGTCATGTTACGAAAGAAGGTTCGATCGCTGGTCCAAGAATGTTAGAGCATATGGTGGATACAGTGTTATATTTTGAA
GGTGAACAACATCATAGTTTCCGAATTTTACGAGCGGTAAAAAACCGATTTGGCTCAACGAACGAGATTGGGATTTTTGA
AATGCATGAGCATGGATTGGAAGAAGTCGCTAACCCTTCACAGATTTTCTTGGAGGAACGCCTAGACGGTGCGACTGGCT
CTGCTATCGTTGTAGCAATGGAAGGAACACGCCCAATTTTGGTAGAGATCCAAGCATTAGTCACACCTACTATGTTCGGA
AATGCTAAGCGAACAACAACAGGTCTTGATTTCAATCGTGTATCTCTAATCATGGCAGTGCTGGAAAAAAGAGCTGGACT
ACTTCTTCAGAATCAAGATGCTTACTTAAAAGCTGCAGGTGGGGTAAAATTAAATGAACCAGCGATTGATTTAGCTATCG
CTGTCAGTATTGCTTCAAGCTACAAAGAAAAAGGAACACAGCCGACGGAATGTTTCATCGGTGAAATCGGACTGACTGGA
GAAATCAGACGTGTCAGTCATATTGAACAACGGGTCAAAGAAGTCCAAAAACTCGGCTTCACAAAAGTTTACCTGCCTAA
AAACAACTTAGGCAACTGGGAAGCGCCAAAAGGAATCGAGATCGTTGGAGTAGCAACTTTGGCTGAAACGTTGAAGCGTG
TGTTCCACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

AAA domain (AAA_25)

(70-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

74.286

99.781

0.741
  radA Streptococcus pneumoniae Rx1

74.286

99.781

0.741
  radA Streptococcus pneumoniae D39

74.286

99.781

0.741
  radA Streptococcus pneumoniae R6

74.286

99.781

0.741
  radA Streptococcus pneumoniae TIGR4

74.286

99.781

0.741
  radA Streptococcus mitis SK321

74.066

99.781

0.739
  radA Bacillus subtilis subsp. subtilis str. 168

67.627

98.904

0.669

Multiple sequence alignment