Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DPR13_RS11560 Genome accession   NZ_CP030110
Coordinates   2303430..2305238 (-) Length   602 a.a.
NCBI ID   WP_002309974.1    Uniprot ID   A0AAW9N0L2
Organism   Enterococcus faecium strain BM4105-RF     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2298430..2310238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPR13_RS11535 (DPR13_11535) - 2299477..2300376 (-) 900 WP_002314141.1 RluA family pseudouridine synthase -
  DPR13_RS11540 (DPR13_11540) - 2300378..2301175 (-) 798 WP_002309983.1 NAD kinase -
  DPR13_RS11545 (DPR13_11545) - 2301150..2301857 (-) 708 WP_002309982.1 GTP pyrophosphokinase family protein -
  DPR13_RS11550 (DPR13_11550) - 2301988..2302563 (+) 576 WP_002314142.1 CYTH domain-containing protein -
  DPR13_RS11555 (DPR13_11555) - 2302681..2303358 (+) 678 WP_002309978.1 ClpXP adapter SpxH family protein -
  DPR13_RS11560 (DPR13_11560) pepF 2303430..2305238 (-) 1809 WP_002309974.1 oligoendopeptidase F Regulator
  DPR13_RS11565 (DPR13_11565) - 2305418..2306416 (-) 999 WP_002335219.1 competence protein CoiA family protein -
  DPR13_RS11570 (DPR13_11570) - 2306514..2307167 (-) 654 WP_002335220.1 adaptor protein MecA -
  DPR13_RS11575 (DPR13_11575) spxA 2307498..2307896 (-) 399 WP_002296384.1 transcriptional regulator SpxA -
  DPR13_RS11580 (DPR13_11580) - 2308660..2309367 (+) 708 WP_002309968.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 69695.09 Da        Isoelectric Point: 4.7352

>NTDB_id=299324 DPR13_RS11560 WP_002309974.1 2303430..2305238(-) (pepF) [Enterococcus faecium strain BM4105-RF]
MEVKQLPKREELPENLTWDLTKIFSSDKEFDEKYLELSEKLKKSEKYKGTLNQGASQFLDAIEFVLSVYRQTEIIYVYAH
LKNDQDTGNTEYQALYARASSLFSKVSEAVSWFEPEILQLSDERIWQYFKEEPKLEVYRHYIQQIVDNRAHVLSADQESL
LAGAGEIFEASSDTFAVLNNADLVFPTIEGENGEKVQLSHGVYGQLLESTDRSVREAAFKGLYSVYEQFRNTFASTLSTH
IKGHNFKAKVRNYSSAREASLSNNHIPESVYDTLVDVVNKHLPLLHRYMELRKRLLEVEKLHMYDLYTPVLGEAPITFTY
EEAKEKALEALKPMGEEYMTIVEKAFSERWIDVVENKGKRSGAYSSGSYDTNPYILLNWHDTLDQLFTLVHEMGHSVHSY
FTRSSQPYVYGDYSIFLAEIASTTNENILTEYLLETEKDPRVRAYVLNHYLDGFKGTVFRQTQFAEFEHFMHTEDEKGVP
LTSEYLSDSYGKLNAKYYGPAVEEDPEIKFEWSRIPHFYYNYYVFQYSTGFSAASALAKRILSQEPDALENYLAYLKAGN
SDYPVEVMKKAGVDMTQAAYIEDAMSMFEQRLNELEELIDRL

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=299324 DPR13_RS11560 WP_002309974.1 2303430..2305238(-) (pepF) [Enterococcus faecium strain BM4105-RF]
ATGGAAGTAAAGCAGTTGCCAAAACGCGAAGAATTGCCTGAAAATTTAACTTGGGACTTGACCAAGATCTTTTCAAGCGA
CAAAGAATTTGATGAGAAATATCTAGAATTATCAGAAAAGTTAAAAAAATCTGAAAAATATAAAGGAACACTTAATCAAG
GCGCTTCTCAATTTCTTGATGCGATTGAATTTGTGTTGAGTGTTTATCGCCAAACCGAAATCATTTATGTCTATGCACAC
CTTAAAAACGATCAAGATACTGGGAATACAGAATATCAAGCGCTTTATGCAAGAGCAAGTAGTTTGTTTTCAAAGGTTAG
TGAAGCTGTTTCCTGGTTTGAACCAGAAATATTGCAGTTATCAGATGAACGGATTTGGCAATATTTCAAAGAAGAACCGA
AGTTAGAAGTCTATCGTCACTATATCCAGCAAATAGTAGATAATCGTGCCCATGTTTTATCTGCCGATCAGGAATCGCTT
CTTGCAGGAGCAGGAGAAATCTTTGAGGCTTCAAGTGATACATTTGCTGTTTTGAATAATGCAGATTTAGTTTTCCCAAC
GATCGAAGGAGAGAATGGTGAAAAAGTCCAATTATCTCATGGTGTGTACGGTCAGTTGCTAGAAAGCACGGATCGAAGTG
TTCGCGAAGCCGCATTTAAAGGGTTGTACAGTGTTTATGAGCAATTTAGAAATACGTTTGCTTCTACTTTAAGTACGCAT
ATAAAAGGACATAATTTTAAAGCAAAAGTTCGTAATTACAGCTCTGCCAGAGAAGCATCTTTGAGCAATAATCACATTCC
TGAAAGTGTATACGACACTTTGGTAGATGTAGTAAACAAGCATTTGCCTTTGCTGCATCGATATATGGAATTACGGAAAC
GTTTATTAGAAGTGGAAAAACTGCACATGTACGATCTTTATACACCGGTCTTAGGAGAAGCTCCAATCACCTTTACGTAT
GAAGAAGCAAAAGAGAAAGCTTTGGAAGCACTGAAGCCAATGGGCGAAGAGTACATGACTATTGTAGAAAAAGCATTCTC
TGAACGTTGGATCGATGTTGTCGAAAATAAAGGAAAACGAAGTGGTGCCTATTCTTCGGGAAGCTATGACACAAATCCAT
ATATTTTATTGAATTGGCATGATACATTGGATCAATTGTTTACGCTTGTCCACGAAATGGGACATAGTGTCCACAGTTAT
TTCACACGATCGAGCCAACCTTATGTATACGGTGACTACTCCATCTTTTTAGCAGAAATAGCTTCGACAACGAACGAAAA
TATCCTAACAGAATATTTATTGGAAACAGAAAAAGACCCTCGCGTCCGAGCTTATGTGCTCAACCATTACTTGGATGGAT
TTAAAGGAACAGTTTTCCGCCAGACACAATTTGCTGAATTCGAGCACTTCATGCATACGGAAGATGAAAAAGGTGTGCCA
TTGACTAGTGAATATCTAAGTGATAGTTATGGTAAATTGAATGCAAAATATTATGGTCCGGCAGTCGAAGAAGACCCAGA
AATCAAATTTGAATGGTCACGGATCCCGCATTTTTACTATAATTACTATGTCTTCCAATACTCGACTGGTTTTTCTGCTG
CTTCAGCGTTGGCGAAAAGAATACTTAGTCAGGAACCAGATGCGCTAGAGAACTATTTGGCTTATCTAAAAGCTGGTAAC
AGTGATTATCCTGTTGAAGTGATGAAAAAAGCAGGAGTAGATATGACACAGGCTGCGTATATCGAAGATGCAATGTCGAT
GTTTGAACAACGACTAAACGAATTAGAAGAATTGATTGATCGTTTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(206-586)

Oligopeptidase F (Peptidase_M3_N)

(116-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

55.649

98.505

0.548

Multiple sequence alignment