Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DPR13_RS09885 Genome accession   NZ_CP030110
Coordinates   1973569..1975251 (-) Length   560 a.a.
NCBI ID   WP_002316937.1    Uniprot ID   A0AAW9N2S0
Organism   Enterococcus faecium strain BM4105-RF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1968569..1980251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPR13_RS09855 (DPR13_09855) ftsL 1969844..1970245 (-) 402 WP_002297992.1 cell division protein FtsL -
  DPR13_RS09860 (DPR13_09860) rsmH 1970250..1971209 (-) 960 WP_002314217.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  DPR13_RS09865 (DPR13_09865) mraZ 1971230..1971661 (-) 432 WP_002291870.1 division/cell wall cluster transcriptional repressor MraZ -
  DPR13_RS09870 (DPR13_09870) - 1971831..1972199 (-) 369 WP_002310272.1 DUF3397 domain-containing protein -
  DPR13_RS09875 (DPR13_09875) - 1972370..1973326 (+) 957 WP_002310271.1 magnesium transporter CorA family protein -
  DPR13_RS09880 (DPR13_09880) - 1973399..1973515 (+) 117 WP_002291876.1 DUF4044 domain-containing protein -
  DPR13_RS09885 (DPR13_09885) recN 1973569..1975251 (-) 1683 WP_002316937.1 DNA repair protein RecN Machinery gene
  DPR13_RS09890 (DPR13_09890) - 1975269..1975718 (-) 450 WP_002286653.1 arginine repressor -
  DPR13_RS09895 (DPR13_09895) - 1975825..1976643 (-) 819 WP_002310269.1 TlyA family RNA methyltransferase -
  DPR13_RS09900 (DPR13_09900) - 1976652..1977542 (-) 891 WP_002334684.1 polyprenyl synthetase family protein -
  DPR13_RS09905 (DPR13_09905) - 1977544..1977768 (-) 225 WP_002286657.1 exodeoxyribonuclease VII small subunit -
  DPR13_RS09910 (DPR13_09910) xseA 1977773..1979110 (-) 1338 WP_002310267.1 exodeoxyribonuclease VII large subunit -
  DPR13_RS09915 (DPR13_09915) - 1979111..1979965 (-) 855 WP_002310266.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63281.65 Da        Isoelectric Point: 4.6045

>NTDB_id=299316 DPR13_RS09885 WP_002316937.1 1973569..1975251(-) (recN) [Enterococcus faecium strain BM4105-RF]
MLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRGSSDYIRQGAEKCILEGLFELPKQEGFSELM
VELGIETDEDNLIVRRDMSLTGKNVCRVNGHIITLANLRKIGSYLVDIQGQNEHQELLQPESHLALLDRFGDAAFQQKKK
SYQQEYTSYRELEKRVRKVQQNEKSYVQRIDMLHFQQEEIAAADLQVGEEEKLKEEREKLSNYQKIADGLAAGYGALTNN
EQNSVDGVGLAVAELQGIAHLDVEYEAIYENIQSAYYLLQDAIGDMSRQIDLLELDESRLEEVTQRLELIRQLKRKYGES
IESILAYYDEITEELASSDFSEGQLDKMKEELEQKELLLQQQAADLHEARKKIAKELEKSILHELKSLYMENTEFEVRFL
KEENRQLNHDGFDQIEFYITTNPGEPLKPLVKVASGGELSRMLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
SQISKHSQVLCITHLPQVAAVADYQYYIVKAVIDGRTQTSVSELKTKEREEEIARMLAGSEITKLTLEHAKELLQLAKRT

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=299316 DPR13_RS09885 WP_002316937.1 1973569..1975251(-) (recN) [Enterococcus faecium strain BM4105-RF]
ATGCTACAAGAAATCAGTATTACTAACTTTGCGATTATTCCGGAATTGCGGCTTTCTTTTCACGAAGGAATGACCGCGCT
GACCGGAGAGACTGGTGCGGGTAAATCCATCATTATCGATGCCTTAGGTTTGTTAGCAGGAGGAAGAGGTTCAAGCGATT
ATATACGTCAAGGCGCAGAAAAATGCATTCTTGAAGGATTGTTTGAACTTCCGAAACAAGAAGGATTCTCTGAATTGATG
GTTGAATTAGGTATCGAAACGGATGAAGACAATCTGATCGTTCGACGGGATATGTCGTTGACTGGAAAAAATGTTTGCCG
AGTGAATGGTCACATCATCACGCTAGCTAATCTAAGGAAAATCGGAAGTTATTTAGTGGATATCCAAGGGCAAAACGAAC
ATCAGGAACTGCTCCAGCCTGAATCACATCTTGCTTTATTGGATCGTTTTGGAGATGCAGCTTTCCAACAGAAGAAAAAG
AGTTATCAGCAAGAATATACCTCTTATCGTGAGCTGGAAAAAAGGGTACGAAAAGTGCAGCAAAATGAAAAATCCTATGT
TCAGAGAATAGATATGCTTCACTTTCAGCAAGAAGAAATAGCTGCTGCTGATTTGCAAGTCGGAGAAGAAGAGAAATTAA
AAGAAGAAAGAGAAAAACTTAGCAATTATCAAAAAATTGCTGATGGATTAGCTGCAGGCTACGGAGCACTGACGAATAAT
GAACAAAACAGTGTAGATGGTGTTGGCTTGGCCGTTGCAGAATTACAAGGGATCGCACATCTAGATGTGGAGTATGAAGC
AATTTATGAAAATATCCAAAGTGCTTACTATTTGCTACAAGATGCAATCGGAGACATGAGTCGTCAAATCGATTTGTTGG
AGTTAGATGAGAGTCGTTTAGAAGAAGTGACTCAACGTTTAGAATTAATCCGACAGTTGAAACGCAAATATGGCGAATCC
ATTGAGTCGATATTGGCTTACTATGACGAAATCACCGAAGAGCTAGCTTCTTCTGATTTTTCAGAAGGTCAATTGGACAA
AATGAAAGAGGAACTAGAGCAAAAAGAGCTTCTACTTCAGCAACAAGCCGCAGATCTTCATGAAGCGCGTAAAAAAATCG
CAAAAGAATTGGAAAAATCCATTCTGCATGAATTAAAAAGTCTGTATATGGAAAACACTGAGTTTGAAGTACGTTTCTTA
AAAGAAGAAAACAGACAATTGAATCATGATGGGTTTGACCAAATCGAATTCTACATTACGACCAATCCAGGAGAGCCGCT
GAAGCCTTTAGTGAAAGTCGCTTCTGGTGGCGAATTATCTCGTATGTTACTGGCTTTGAAAACTATTTTTTCTTCTGAGC
AAGGTGTGACAAGTATTATCTTTGATGAAGTGGATACAGGTGTAAGTGGAAGAGTTGCACAAGCCATCGCGGATAAAATT
TCTCAAATATCGAAACATTCTCAAGTTTTGTGCATTACTCATCTGCCGCAAGTCGCCGCAGTCGCTGACTATCAATATTA
TATCGTGAAAGCAGTGATTGATGGTCGTACGCAAACTTCTGTTTCAGAATTGAAAACAAAAGAAAGAGAAGAAGAAATTG
CACGTATGCTAGCTGGAAGTGAGATTACAAAACTGACACTCGAACATGCAAAAGAACTATTGCAACTCGCAAAAAGGACC
TGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.298

100

0.502

Multiple sequence alignment