Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   ETA18_RS05850 Genome accession   NZ_CP035400
Coordinates   1134303..1137695 (+) Length   1130 a.a.
NCBI ID   WP_128992615.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103835     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1129303..1142695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA18_RS05840 (ETA18_05840) addA 1129361..1133059 (+) 3699 WP_128992613.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  ETA18_RS05845 (ETA18_05845) sbcD 1133131..1134306 (+) 1176 WP_128992614.1 exonuclease subunit SbcD -
  ETA18_RS05850 (ETA18_05850) sbcC 1134303..1137695 (+) 3393 WP_128992615.1 exonuclease subunit SbcC Machinery gene
  ETA18_RS05855 (ETA18_05855) hlpB 1137709..1138011 (+) 303 WP_128992616.1 HNH nuclease-like protein HlpB -
  ETA18_RS05860 (ETA18_05860) gerPF 1138048..1138266 (-) 219 WP_003233096.1 spore germination protein -
  ETA18_RS05865 (ETA18_05865) gerPE 1138298..1138699 (-) 402 WP_087614489.1 spore germination protein GerPE -
  ETA18_RS05870 (ETA18_05870) gerPD 1138699..1138875 (-) 177 WP_003233093.1 spore germination protein GerPD -
  ETA18_RS05875 (ETA18_05875) gerPC 1138872..1139489 (-) 618 WP_003245548.1 spore germination protein GerPC -
  ETA18_RS05880 (ETA18_05880) gerPB 1139512..1139745 (-) 234 WP_003233090.1 spore germination protein GerPB -
  ETA18_RS05885 (ETA18_05885) gerPA 1139760..1139981 (-) 222 WP_003233088.1 spore germination protein -
  ETA18_RS05890 (ETA18_05890) yisI 1140405..1140575 (-) 171 WP_003233086.1 aspartyl-phosphate phosphatase YisI -
  ETA18_RS05895 (ETA18_05895) yisJ 1140721..1141644 (-) 924 WP_128992617.1 CotH kinase family protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128816.25 Da        Isoelectric Point: 5.2462

>NTDB_id=299308 ETA18_RS05850 WP_128992615.1 1134303..1137695(+) (sbcC) [Bacillus subtilis strain SRCM103835]
MKPIALSIKGLHSFREEQTIDFEGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNQAEDTLSVSFTF
ALQTNHQISYKVERVFKRTDEMKVKTALCRFIEIKDEHTVLADKASEVNKRVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRQAQEANARKNEMLAEQSGLGEASSEAVEQAEKALEQAEARLEAMRKNRDQAK
ERFTEHQEIWNVQKEKSAYEEEEKRLAEEQPHIDSMQKRLLEAETAAALKPYADRYAEAIQHEEQAEKEQTLAQKDLADR
TAFFQQKHEEYEAWRQHKSEKEPELLTEQEQLSRLQEIEIKLSEAKQEEERKKADLRQKEEALQSVMNELETVTDRLTRG
QNRQTELKHQLKSLQVTSDERKSCQQAAEMALRIRQTEEQIKKEKKRSDELNLVLQKMNEEKNTLVQKTEAEENNIIQAY
EAVQTVFHLVCETERSLTRMTEEARKSQHTLHLQREKARVALLTKELAQKLTAGKPCPVCGSTDHDPSASVHETYEADSH
LEEDIKRTDVLLTEAAALSQEILSAKITLEEQSARFIEQCPFLQTIQAQNLEAAASFEHQPVYEAFENAKFEWKRIKQDI
LSVKTRMAQMIGAYQESLKKAEQLNEKIGFEKREADRIESIISELQSSMDSSLNMFKEAFQNQSVDEAEKWQQAIEEKDR
AAEECEKRIEKSIAFLAEHEAQKEKLRESGHRLEREKLELHYAAERIKSVIADYEHELGDYAKGDSIQIKLRSVQQDLKL
LKEKEQSLYEELQSAQMKLNQAKSRASASELTLQEAKGRLEKAKAAWLEHTKNTSITRTEEVEQSLIPADELEKMKTGID
QFMDKLKQNAANLKRVAEILAGRALSESEWNETVAALQEAEDAFGAAIEEKGAAAKALAVIRDHHKRFNEIEAELKKWQT
HIDRLDKLQAVFKGNTFVEFLAEEQLESVARDASARLSMLTRQRYAIEVDSEGGFVMRDDANGGVRRPVSSLSGGETFLT
SLSLALALSAQIQLRGEYPLQFFFLDEGFGTLDQDLLDTVVTALEKLQSDNLAVGVISHVQELRARLPKKLIVHPAEPSG
RGTRVSLELM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=299308 ETA18_RS05850 WP_128992615.1 1134303..1137695(+) (sbcC) [Bacillus subtilis strain SRCM103835]
ATGAAGCCGATCGCCTTAAGCATTAAGGGGCTCCACAGCTTTAGAGAGGAGCAGACGATAGATTTTGAAGGCCTTTCCGG
TGCCGGTGTTTTCGGCATTTTCGGTCCGACAGGAAGCGGTAAATCCTCTATTCTTGACGCAATGACGCTTGCTTTATACG
GAAAGGTGGAACGGGCGGCGAATAATACGCACGGTATCTTAAACCAGGCGGAAGATACGCTGTCTGTTTCCTTTACCTTT
GCGCTTCAGACGAATCACCAAATCTCATACAAAGTCGAGCGTGTGTTTAAGAGAACGGATGAAATGAAGGTAAAAACGGC
ACTTTGCCGCTTCATCGAAATCAAGGACGAGCATACGGTGCTGGCTGATAAAGCCAGCGAAGTGAATAAAAGAGTTGAGG
AGCTCTTAGGGCTGACGATCGACGATTTTACGAGAGCGGTGGTGCTGCCCCAAGGGAAATTTGCTGAATTTCTGTCTTTA
AAAGGGGCAGAGCGCAGGCATATGCTTCAGCGTTTATTTAATTTGGAGCAATATGGAGACAGGCTTGTGAAAAAGCTGAG
ACGGCAGGCGCAGGAAGCCAATGCGAGAAAAAATGAAATGCTTGCTGAACAGTCCGGTCTCGGTGAGGCGAGCTCAGAGG
CAGTGGAGCAGGCTGAAAAGGCTCTCGAACAAGCTGAAGCCCGGCTGGAAGCGATGAGGAAGAACCGTGATCAGGCGAAG
GAGCGGTTTACAGAGCATCAGGAGATATGGAATGTCCAAAAGGAAAAATCCGCTTATGAAGAAGAGGAAAAACGTCTCGC
AGAAGAACAGCCGCATATAGACAGCATGCAAAAACGCCTGCTGGAAGCAGAAACAGCAGCAGCCCTTAAGCCCTATGCGG
ACCGGTACGCAGAAGCGATCCAGCATGAGGAGCAAGCTGAAAAGGAACAAACGCTAGCCCAAAAGGATTTAGCAGACCGG
ACAGCTTTCTTTCAGCAAAAACATGAAGAGTATGAAGCGTGGCGCCAGCATAAAAGCGAGAAAGAGCCTGAGCTTTTAAC
AGAGCAGGAACAGCTTTCACGCTTGCAGGAAATCGAAATCAAACTGAGTGAGGCCAAGCAAGAGGAAGAGCGCAAAAAGG
CTGACCTTCGGCAGAAAGAAGAGGCTCTTCAATCTGTCATGAATGAATTAGAGACCGTAACAGACCGCCTGACACGAGGG
CAAAACAGACAGACAGAATTGAAACATCAGCTCAAATCCCTGCAGGTGACATCCGATGAGCGAAAAAGCTGCCAGCAGGC
CGCAGAAATGGCATTGCGCATCAGACAAACCGAGGAGCAAATCAAAAAAGAGAAAAAACGAAGTGACGAATTGAACCTCG
TGCTTCAGAAGATGAATGAAGAGAAGAATACACTCGTTCAAAAGACGGAAGCGGAAGAAAACAACATCATTCAGGCATAT
GAGGCTGTACAAACTGTGTTCCATTTGGTGTGCGAAACGGAACGCTCATTAACACGTATGACGGAAGAGGCTAGAAAGAG
TCAACACACGCTTCATTTACAGCGTGAAAAAGCAAGGGTGGCACTGCTGACAAAAGAGTTAGCCCAAAAGCTGACTGCCG
GAAAGCCTTGCCCGGTATGCGGTTCAACCGATCATGATCCATCTGCCTCAGTACATGAAACATATGAAGCCGACAGCCAT
CTTGAAGAGGACATCAAACGGACAGATGTGTTATTGACGGAAGCTGCAGCTCTCAGCCAGGAGATTCTTTCAGCCAAAAT
TACGCTTGAAGAACAGTCCGCGCGCTTTATTGAACAGTGTCCGTTTTTGCAGACAATTCAAGCGCAGAACCTTGAAGCGG
CAGCTTCCTTCGAACATCAGCCGGTGTATGAAGCATTTGAAAATGCCAAATTCGAATGGAAACGAATCAAGCAGGACATT
CTTTCTGTTAAGACACGAATGGCACAAATGATTGGCGCCTATCAGGAGTCTTTAAAAAAGGCCGAGCAGCTTAATGAAAA
AATCGGTTTTGAAAAAAGAGAAGCTGACCGTATTGAAAGCATCATCAGCGAGCTTCAATCCTCAATGGACAGCAGTCTGA
ACATGTTTAAAGAAGCATTTCAGAATCAATCTGTGGACGAAGCAGAAAAATGGCAGCAAGCCATTGAAGAAAAGGACCGG
GCTGCAGAAGAATGTGAAAAACGAATTGAGAAGAGTATCGCGTTTCTTGCTGAGCATGAAGCACAAAAGGAAAAGCTGCG
GGAATCTGGACACCGGCTTGAACGGGAAAAGCTGGAGCTTCATTATGCGGCTGAACGCATCAAGAGCGTGATAGCTGATT
ATGAGCACGAACTCGGAGATTATGCAAAAGGAGATTCGATTCAAATCAAACTCCGCTCTGTCCAGCAGGATCTAAAGCTG
TTAAAGGAAAAAGAACAATCTTTATATGAAGAACTGCAAAGCGCCCAAATGAAGCTCAACCAGGCGAAAAGCCGCGCTTC
TGCAAGCGAGCTCACTCTTCAAGAGGCGAAGGGCAGATTGGAAAAAGCAAAAGCTGCTTGGCTTGAGCATACAAAAAACA
CCTCCATTACCCGGACTGAGGAGGTTGAACAAAGTCTCATCCCAGCTGATGAACTTGAAAAGATGAAAACCGGCATAGAC
CAGTTTATGGATAAACTGAAGCAAAATGCTGCAAACTTAAAACGAGTAGCAGAGATACTTGCTGGCAGAGCATTATCAGA
GAGCGAATGGAACGAAACCGTTGCGGCATTACAAGAAGCTGAGGACGCATTTGGCGCTGCTATAGAGGAAAAAGGCGCGG
CAGCAAAAGCATTGGCTGTCATTCGCGACCATCATAAACGGTTTAATGAAATTGAAGCTGAACTGAAAAAATGGCAGACG
CATATCGACAGGCTGGACAAGCTGCAAGCTGTGTTTAAAGGCAATACCTTCGTCGAATTTTTAGCTGAGGAGCAGCTTGA
AAGCGTTGCGAGGGACGCCTCAGCAAGACTCAGTATGCTGACAAGACAGCGCTATGCCATCGAAGTAGATTCAGAAGGCG
GCTTCGTGATGCGGGATGACGCGAATGGAGGCGTACGACGCCCGGTTTCCAGTTTGTCTGGAGGAGAGACCTTCCTCACC
TCGCTTTCACTTGCTCTTGCGCTGTCTGCTCAGATTCAGCTTCGGGGGGAATACCCGCTGCAGTTCTTTTTCTTAGATGA
AGGCTTCGGCACACTGGATCAAGATCTGCTTGATACGGTTGTAACGGCCTTGGAAAAACTTCAGTCAGACAATCTGGCTG
TCGGTGTCATCAGCCATGTGCAGGAACTGCGTGCACGGCTTCCGAAAAAGCTGATCGTCCATCCGGCTGAACCGAGCGGC
CGCGGTACGCGGGTATCACTTGAGTTGATGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(6-253)

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1002-1085)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

99.027

100

0.99