Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ETA18_RS03035 Genome accession   NZ_CP035400
Coordinates   577732..578373 (+) Length   213 a.a.
NCBI ID   WP_003234184.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103835     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 572732..583373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA18_RS03005 (ETA18_03005) ydfE 573927..574550 (-) 624 WP_029725823.1 flavin reductase family protein -
  ETA18_RS03010 (ETA18_03010) ydfF 574640..575320 (+) 681 WP_128992442.1 winged helix-turn-helix domain-containing protein -
  ETA18_RS03015 (ETA18_03015) ydfG 575400..575843 (-) 444 WP_128992443.1 carboxymuconolactone decarboxylase family protein -
  ETA18_RS03020 (ETA18_03020) - 575929..576108 (-) 180 WP_010886421.1 hypothetical protein -
  ETA18_RS03025 (ETA18_03025) - 576105..576248 (-) 144 WP_003243880.1 hypothetical protein -
  ETA18_RS03030 (ETA18_03030) ydfH 576516..577739 (+) 1224 WP_032678641.1 two-component system sensor histidine kinase YdfH -
  ETA18_RS03035 (ETA18_03035) vraR 577732..578373 (+) 642 WP_003234184.1 two-component system response regulator YdfI Regulator
  ETA18_RS03040 (ETA18_03040) pleJ 578489..580663 (+) 2175 WP_128422113.1 MMPL family transporter -
  ETA18_RS03045 (ETA18_03045) cesA 581076..581977 (-) 902 Protein_545 carboxylesterase -
  ETA18_RS03050 (ETA18_03050) ydfK 582180..582869 (-) 690 WP_015252719.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23985.98 Da        Isoelectric Point: 5.4183

>NTDB_id=299290 ETA18_RS03035 WP_003234184.1 577732..578373(+) (vraR) [Bacillus subtilis strain SRCM103835]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDIPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=299290 ETA18_RS03035 WP_003234184.1 577732..578373(+) (vraR) [Bacillus subtilis strain SRCM103835]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATATCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTCAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCTAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.061

0.362

Multiple sequence alignment